Mercurial > repos > iuc > umi_tools_extract

annotate test-data/out_single.log @ 1:79436b3019e9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
author iuc
date Tue, 29 Aug 2017 17:37:07 -0400
parents 418b961e0576
children d1015c2516b7
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
1 # output generated by extract --bc-pattern=XXXNNN --stdin=/tmp/tmpREDhtd/files/003/dataset_3766.dat --stdout /tmp/tmpREDhtd/files/003/dataset_3767.dat --3prime --quality-filter-threshold 10 --quality-encoding phred33 --log=/tmp/tmpREDhtd/files/003/dataset_3768.dat
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
2 # job started at Tue Aug 29 14:20:26 2017 on gaius -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
3 # pid: 21338, system: Linux 4.10.0-33-generic #37-Ubuntu SMP Fri Aug 11 10:55:28 UTC 2017 x86_64
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
4 # blacklist : None
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
5 # compresslevel : 6
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
6 # error_correct_cell : False
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
7 # extract_method : string
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
8 # filter_cell_barcode : None
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
9 # filter_cell_barcodes : False
0
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
10 # log2stderr : False
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
11 # loglevel : 1
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
12 # pattern : XXXNNN
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
13 # pattern2 : None
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
14 # prime3 : True
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
15 # quality_encoding : phred33
1
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
16 # quality_filter_mask : None
0
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
17 # quality_filter_threshold : 10
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
18 # random_seed : None
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
19 # read2_in : None
1
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
20 # read2_out : False
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
21 # read2_stdout : False
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
22 # reads_subset : None
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
23 # reconcile : False
0
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
24 # short_help : None
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
25 # stderr : <_io.TextIOWrapper name='<stderr>' mode='w' encoding='UTF-8'>
1
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
26 # stdin : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3766.dat' mode='r' encoding='UTF-8'>
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
27 # stdlog : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3768.dat' mode='a' encoding='UTF-8'>
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
28 # stdout : <_io.TextIOWrapper name='/tmp/tmpREDhtd/files/003/dataset_3767.dat' mode='w' encoding='UTF-8'>
0
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
29 # timeit_file : None
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
30 # timeit_header : None
418b961e0576 planemo upload commit 453bb3b44d9f27908cbe2677378da88b9f77b5cf
iuc
parents:
diff changeset
31 # timeit_name : all
1
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
32 # whitelist : None
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
33 2017-08-29 14:20:26,493 INFO Starting barcode extraction
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
34 2017-08-29 14:20:26,495 INFO Input Reads: 100
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
35 2017-08-29 14:20:26,495 INFO Reads output: 72
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
36 2017-08-29 14:20:26,495 INFO filtered: umi quality: 28
79436b3019e9 planemo upload commit c8e46ecad0b1473097517e582ed6c43eb0635b36
iuc
parents: 0
diff changeset
37 # job finished in 0 seconds at Tue Aug 29 14:20:26 2017 -- 0.75 0.02 0.00 0.00 -- 1cfd46e7-5d74-4c25-8cdd-89cf8f41a393