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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit 5de7b91f2bda9c351f9512601f899248b7278924
author | iuc |
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date | Sun, 17 Mar 2024 18:10:36 +0000 |
parents | 79e2ee4e6ebb |
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#Sample Tree node Parsimony score Optimal (y/n) Parsimony-increasing mutations (for optimal nodes) Sample1 1 3 n N/A Sample1 2 4 n N/A Sample1 Wuhan_HBCDC-HB-06_2020 6 n N/A Sample1 Wuhan_HBCDC-HB-02_2020 6 n N/A Sample1 Wuhan_HBCDC-HB-04_2020 6 n N/A Sample1 Shanghai_SH0075_2020 6 n N/A Sample1 Shanghai_SH0010_2020 6 n N/A Sample1 Tianmen_HBCDC-HB-07_2020 6 n N/A Sample1 Shanghai_SH0041_2020 6 n N/A Sample1 India_1-31_2020 6 n N/A Sample1 Shanghai_SH0009_2020 6 n N/A Sample1 Malaysia_MKAK-CL-2020-5096_2020 6 n N/A Sample1 3 6 n N/A Sample1 France_GE1583_2020 11 n N/A Sample1 Georgia_Tb-390_2020 11 n N/A Sample1 Spain_Valencia6_2020 11 n N/A Sample1 Spain_CastillayLeon201437_2020 11 n N/A Sample1 node_12_condensed_6_leaves 11 n N/A Sample1 4 6 n N/A Sample1 Sichuan_IVDC-SC-001_2020 9 n N/A Sample1 USA_CA1_2020 9 n N/A Sample1 USA_IL2_2020 9 n N/A Sample1 Vietnam_CM99_2020 9 n N/A Sample1 node_13_condensed_3_leaves 9 n N/A Sample1 5 6 n N/A Sample1 Shanghai_SH0035_2020 8 n N/A Sample1 Australia_QLD02_2020 8 n N/A Sample1 Australia_QLD03_2020 8 n N/A Sample1 Australia_VIC07_2020 8 n N/A Sample1 6 8 n N/A Sample1 Netherlands_Utrecht_16_2020 9 n N/A Sample1 Netherlands_Utrecht_17_2020 9 n N/A Sample1 node_14_condensed_6_leaves 8 n N/A Sample1 7 6 n N/A Sample1 Shandong_LY003_2020 7 n N/A Sample1 Shandong_LY005_2020 7 n N/A Sample1 node_15_condensed_3_leaves 7 n N/A Sample1 8 6 n N/A Sample1 node_16_condensed_2_leaves 10 n N/A Sample1 England_02_2020 6 n N/A Sample1 9 6 n N/A Sample1 Chongqing_YC01_2020 7 n N/A Sample1 10 7 n N/A Sample1 11 9 n N/A Sample1 USA_CA-CDPH-UC7_2020 12 n N/A Sample1 USA_CA-CDPH-UC9_2020 12 n N/A Sample1 12 9 n N/A Sample1 node_37_condensed_2_leaves 11 n N/A Sample1 Malaysia_MKAK-CL-2020-6430_2020 7 n N/A Sample1 node_17_condensed_3_leaves 7 n N/A Sample1 13 6 n N/A Sample1 Shanghai_SH0059_2020 7 n N/A Sample1 USA_TX1_2020 7 n N/A Sample1 14 7 n N/A Sample1 Japan_TY-WK-012_2020 8 n N/A Sample1 node_26_condensed_2_leaves 8 n N/A Sample1 Shanghai_SH0004_2020 7 n N/A Sample1 Germany_BavPat3_2020 7 n N/A Sample1 Shanghai_SH0005_2020 7 n N/A Sample1 15 6 n N/A Sample1 Yunnan_IVDC-YN-003_2020 7 n N/A Sample1 USA_AZ1_2020 7 n N/A Sample1 Anhui_SZ005_2020 5 n N/A Sample1 16 6 n N/A Sample1 Beijing_233_2020 8 n N/A Sample1 node_18_condensed_3_leaves 8 n N/A Sample1 node_2_condensed_10_leaves 6 n N/A Sample1 Shanghai_SH0007_2020 4 n N/A Sample1 Hangzhou_ZJU-07_2020 4 n N/A Sample1 Wuhan_IPBCAMS-WH-03_2019 4 n N/A Sample1 Wuhan_WH01_2019 4 n N/A Sample1 Wuhan_WIV07_2019 4 n N/A Sample1 Shanghai_SH0093_2020 4 n N/A Sample1 Wuhan_HBCDC-HB-01_2019 4 n N/A Sample1 Wuhan_IPBCAMS-WH-01_2019 4 n N/A Sample1 Wuhan_IVDC-HB-04_2020 4 n N/A Sample1 Wuhan_IVDC-HB-05_2019 4 n N/A Sample1 Wuhan_WIV05_2019 4 n N/A Sample1 Sweden_01_2020 4 n N/A Sample1 Taiwan_2_2020 4 n N/A Sample1 USA_CA2_2020 4 n N/A Sample1 Shanghai_SH0040_2020 4 n N/A Sample1 Singapore_7_2020 4 n N/A Sample1 Australia_VIC02_2020 4 n N/A Sample1 France_IDF0515_2020 4 n N/A Sample1 Hangzhou_ZJU-01_2020 4 n N/A Sample1 Shanghai_SH0037_2020 4 n N/A Sample1 Nepal_61_2020 4 n N/A Sample1 China_WH-09_2020 4 n N/A Sample1 Jiangxi_IVDC-JX-002_2020 4 n N/A Sample1 Zhejiang_WZ-01_2020 4 n N/A Sample1 Japan_KY-V-029_2020 4 n N/A Sample1 Hangzhou_ZJU-03_2020 4 n N/A Sample1 Netherlands_Utrecht_12_2020 4 n N/A Sample1 Singapore_1_2020 4 n N/A Sample1 Taiwan_NTU02_2020 4 n N/A Sample1 England_SHEF-BFD36_2020 4 n N/A Sample1 France_IDF0626_2020 4 n N/A Sample1 Malaysia_MKAK-CL-2020-7554_2020 4 n N/A Sample1 Cambodia_0012_2020 4 n N/A Sample1 17 4 n N/A Sample1 USA_CA-CDPH-UC2_2020 5 n N/A Sample1 USA_CA-CDPH-UC3_2020 5 n N/A Sample1 node_3_condensed_2_leaves 5 n N/A Sample1 18 4 n N/A Sample1 node_4_condensed_2_leaves 5 n N/A Sample1 19 1 y A27669G Sample1 Germany_NRW-10_2020 2 n N/A Sample1 Germany_NRW-09_2020 2 n N/A Sample1 Poland_PL_P1_2020 2 n N/A Sample1 20 2 n N/A Sample1 Germany_NRW-04_2020 4 n N/A Sample1 Germany_NRW-07_2020 4 n N/A Sample1 21 4 n N/A Sample1 node_27_condensed_3_leaves 6 n N/A Sample1 node_5_condensed_5_leaves 2 n N/A Sample1 22 4 n N/A Sample1 Malaysia_MKAK-CL-2020-5045_2020 5 n N/A Sample1 node_6_condensed_3_leaves 5 n N/A Sample1 23 4 n N/A Sample1 Jiangsu_JS01_2020 5 n N/A Sample1 Shanghai_SH0031_2020 5 n N/A Sample1 24 4 n N/A Sample1 Australia_NSW02_2020 5 n N/A Sample1 25 5 n N/A Sample1 Hangzhou_ZJU-06_2020 6 n N/A Sample1 26 6 n N/A Sample1 Shanghai_SH0085_2020 8 n N/A Sample1 Shanghai_SH0094_2020 8 n N/A Sample1 27 4 n N/A Sample1 India_1-27_2020 5 n N/A Sample1 Shanghai_SH0011_2020 5 n N/A Sample1 Fujian_13_2020 5 n N/A Sample1 Singapore_11_2020 5 n N/A Sample1 USA_WI1_2020 5 n N/A Sample1 28 4 n N/A Sample1 Wuhan_HBCDC-HB-05_2020 8 n N/A Sample1 Shandong_IVDC-SD-001_2020 8 n N/A Sample1 England_200960041_2020 8 n N/A Sample1 Australia_NSW05_2020 8 n N/A Sample1 29 8 n N/A Sample1 Georgia_Tb-82_2020 10 n N/A Sample1 Australia_NSW09_2020 10 n N/A Sample1 30 10 n N/A Sample1 Canada_BC_25211_2020 11 n N/A Sample1 Kuwait_KU09_2020 11 n N/A Sample1 Kuwait_KU18_2020 10 n N/A Sample1 Kuwait_KU12_2020 10 n N/A Sample1 Australia_NSW06_2020 10 n N/A Sample1 31 8 n N/A Sample1 node_19_condensed_2_leaves 10 n N/A Sample1 32 8 n N/A Sample1 Taiwan_CGMH-CGU-04_2020 11 n N/A Sample1 node_20_condensed_2_leaves 11 n N/A Sample1 Kuwait_KU17_2020 8 n N/A Sample1 33 8 n N/A Sample1 Canada_BC_17397_2020 9 n N/A Sample1 Canada_BC_13297_2020 9 n N/A Sample1 34 8 n N/A Sample1 Australia_QLD09_2020 9 n N/A Sample1 Australia_NSW07_2020 9 n N/A Sample1 35 8 n N/A Sample1 USA_NY1-PV08001_2020 9 n N/A Sample1 Canada_BC_37_0-2_2020 9 n N/A Sample1 Canada_BC_69243_2020 9 n N/A Sample1 36 9 n N/A Sample1 England_200990002_2020 11 n N/A Sample1 Germany_BavPat2_2020 11 n N/A Sample1 37 4 n N/A Sample1 node_7_condensed_3_leaves 6 n N/A Sample1 38 4 n N/A Sample1 Jiangsu_JS02_2020 5 n N/A Sample1 Shanghai_SH0008_2020 5 n N/A Sample1 USA_CA5_2020 5 n N/A Sample1 39 4 n N/A Sample1 Wuhan_WIV02_2019 5 n N/A Sample1 node_8_condensed_2_leaves 5 n N/A Sample1 40 4 n N/A Sample1 node_9_condensed_2_leaves 5 n N/A Sample1 41 4 n N/A Sample1 Japan_Hu_DP_Kng_19-027_2020 5 n N/A Sample1 node_10_condensed_3_leaves 5 n N/A Sample1 42 4 n N/A Sample1 Hangzhou_ZJU-09_2020 5 n N/A Sample1 Australia_VIC01_2020 5 n N/A Sample1 43 4 n N/A Sample1 USA_MA1_2020 5 n N/A Sample1 44 5 n N/A Sample1 Shanghai_SH0058_2020 6 n N/A Sample1 45 6 n N/A Sample1 node_28_condensed_2_leaves 7 n N/A Sample1 node_21_condensed_2_leaves 6 n N/A Sample1 46 4 n N/A Sample1 47 6 n N/A Sample1 France_B2334_2020 8 n N/A Sample1 France_B2340_2020 8 n N/A Sample1 48 6 n N/A Sample1 Georgia_Tb-468_2020 7 n N/A Sample1 Georgia_Tb-537_2020 7 n N/A Sample1 Georgia_Tb-54_2020 7 n N/A Sample1 Italy_SPL1_2020 6 n N/A Sample1 49 4 n N/A Sample1 England_20102000106_2020 7 n N/A Sample1 50 7 n N/A Sample1 England_09c_2020 9 n N/A Sample1 Brazil_ES-225_2020 9 n N/A Sample1 England_20100001406_2020 9 n N/A Sample1 51 9 n N/A Sample1 node_29_condensed_3_leaves 10 n N/A Sample1 52 7 n N/A Sample1 Brazil_SPBR-10_2020 6 n N/A Sample1 Switzerland_1000477102_2020 8 n N/A Sample1 Brazil_SPBR-02_2020 8 n N/A Sample1 England_200990006_2020 8 n N/A Sample1 Netherlands_Utrecht_18_2020 8 n N/A Sample1 England_200960515_2020 7 n N/A Sample1 53 7 n N/A Sample1 node_22_condensed_3_leaves 8 n N/A Sample1 54 4 n N/A Sample1 Netherlands_Utrecht_19_2020 5 n N/A Sample1 Netherlands_Limburg_6_2020 5 n N/A Sample1 Netherlands_Naarden_1364774_2020 5 n N/A Sample1 55 5 n N/A Sample1 node_23_condensed_2_leaves 6 n N/A Sample1 56 5 n N/A Sample1 Netherlands_Oss_1363500_2020 6 n N/A Sample1 Netherlands_Tilburg_1363354_2020 6 n N/A Sample1 57 4 n N/A Sample1 Singapore_8_2020 5 n N/A Sample1 58 5 n N/A Sample1 node_24_condensed_3_leaves 6 n N/A Sample1 59 4 n N/A Sample1 Shanghai_SH0086_2020 7 n N/A Sample1 60 7 n N/A Sample1 Finland_FIN-25_2020 8 n N/A Sample1 Belgium_DB-03023_2020 8 n N/A Sample1 Denmark_SSI-102_2020 8 n N/A Sample1 Denmark_SSI-02_2020 8 n N/A Sample1 Belgium_BM-03012_2020 8 n N/A Sample1 England_20100022706_2020 8 n N/A Sample1 Denmark_SSI-04_2020 8 n N/A Sample1 Taiwan_NTU03_2020 8 n N/A Sample1 Finland_FIN03032020A_2020 8 n N/A Sample1 Switzerland_GE4984_2020 8 n N/A Sample1 Switzerland_AG0361_2020 8 n N/A Sample1 Finland_FIN-266_2020 8 n N/A Sample1 Luxembourg_Lux1_2020 8 n N/A Sample1 Japan_SMU-0311S3_2020 8 n N/A Sample1 Denmark_SSI-03_2020 8 n N/A Sample1 Netherlands_Gelderland_2_2020 8 n N/A Sample1 Georgia_Tb-273_2020 8 n N/A Sample1 Belgium_SH-03014_2020 8 n N/A Sample1 61 8 n N/A Sample1 62 9 n N/A Sample1 node_38_condensed_2_leaves 11 n N/A Sample1 node_30_condensed_4_leaves 9 n N/A Sample1 63 8 n N/A Sample1 France_HF2174_2020 10 n N/A Sample1 France_GE1977_2020 10 n N/A Sample1 France_HF1684_2020 10 n N/A Sample1 64 10 n N/A Sample1 node_39_condensed_2_leaves 11 n N/A Sample1 Belgium_VAG-03013_2020 8 n N/A Sample1 65 8 n N/A Sample1 Netherlands_Utrecht_1363564_2020 12 n N/A Sample1 node_31_condensed_2_leaves 12 n N/A Sample1 66 8 n N/A Sample1 England_20099107406_2020 9 n N/A Sample1 Georgia_Tb_2020 9 n N/A Sample1 67 8 n N/A Sample1 France_BFC2094_2020 9 n N/A Sample1 France_BFC2147_2020 9 n N/A Sample1 node_32_condensed_4_leaves 9 n N/A Sample1 68 8 n N/A Sample1 Hungary_mbl1_2020 9 n N/A Sample1 node_33_condensed_5_leaves 9 n N/A Sample1 69 8 n N/A Sample1 Nigeria_Lagos01_2020 11 n N/A Sample1 Netherlands_Delft_1363424_2020 11 n N/A Sample1 Denmark_SSI-01_2020 11 n N/A Sample1 England_200990723_2020 11 n N/A Sample1 Switzerland_TI2045_2020 11 n N/A Sample1 Switzerland_1000477377_2020 11 n N/A Sample1 Denmark_SSI-05_2020 11 n N/A Sample1 Chile_Santiago-2_2020 11 n N/A Sample1 Brazil_SPBR-14_2020 11 n N/A Sample1 Finland_FIN-318_2020 11 n N/A Sample1 Netherlands_Limburg_5_2020 11 n N/A Sample1 Belgium_DBA-03032_2020 11 n N/A Sample1 Switzerland_SZ1417_2020 11 n N/A Sample1 Belgium_GMH-03022_2020 11 n N/A Sample1 Netherlands_Utrecht_14_2020 11 n N/A Sample1 Netherlands_Utrecht_1_2020 11 n N/A Sample1 Finland_FIN03032020C_2020 11 n N/A Sample1 Netherlands_Berlicum_1363564_2020 11 n N/A Sample1 70 11 n N/A Sample1 node_40_condensed_2_leaves 13 n N/A Sample1 71 11 n N/A Sample1 node_41_condensed_2_leaves 12 n N/A Sample1 72 11 n N/A Sample1 node_42_condensed_2_leaves 12 n N/A Sample1 73 11 n N/A Sample1 Switzerland_1000477797_2020 12 n N/A Sample1 Brazil_BA-312_2020 12 n N/A Sample1 node_43_condensed_3_leaves 12 n N/A Sample1 74 11 n N/A Sample1 Finland_FIN-313_2020 13 n N/A Sample1 Netherlands_Utrecht_15_2020 13 n N/A Sample1 75 11 n N/A Sample1 Switzerland_GE1422_2020 12 n N/A Sample1 Netherlands_Diemen_1363454_2020 12 n N/A Sample1 node_44_condensed_3_leaves 12 n N/A Sample1 76 11 n N/A Sample1 Switzerland_BE6651_2020 12 n N/A Sample1 Netherlands_NoordHolland_2_2020 12 n N/A Sample1 node_45_condensed_6_leaves 12 n N/A Sample1 Belgium_BC-03016_2020 11 n N/A Sample1 77 11 n N/A Sample1 Switzerland_1000477757_2020 12 n N/A Sample1 Brazil_SPBR-12_2020 12 n N/A Sample1 Germany_Baden-Wuerttemberg-1_2020 12 n N/A Sample1 78 11 n N/A Sample1 node_46_condensed_16_leaves 12 n N/A Sample1 79 11 n N/A Sample1 Belgium_UMF-03025_2020 12 n N/A Sample1 80 12 n N/A Sample1 node_47_condensed_2_leaves 13 n N/A Sample1 node_34_condensed_7_leaves 11 n N/A Sample1 81 8 n N/A Sample1 Netherlands_NoordHolland_3_2020 9 n N/A Sample1 Netherlands_Flevoland_1_2020 9 n N/A Sample1 82 8 n N/A Sample1 NetherlandsL_Houten_1363498_2020 9 n N/A Sample1 Italy_UniSR1_2020 9 n N/A Sample1 France_N1620_2020 9 n N/A Sample1 node_35_condensed_3_leaves 9 n N/A Sample1 83 8 n N/A Sample1 Georgia_Tb-673_2020 10 n N/A Sample1 France_B2330_2020 10 n N/A Sample1 France_PL1643_2020 10 n N/A Sample1 France_HF1988_2020 10 n N/A Sample1 France_B2348_2020 10 n N/A Sample1 84 10 n N/A Sample1 France_B2351_2020 11 n N/A Sample1 France_B2344_2020 11 n N/A Sample1 France_B2349_2020 11 n N/A Sample1 85 10 n N/A Sample1 France_IDF2256_2020 11 n N/A Sample1 France_HF1871_2020 11 n N/A Sample1 Netherlands_Haarlem_1363688_2020 10 n N/A Sample1 node_36_condensed_6_leaves 10 n N/A Sample1 node_25_condensed_15_leaves 8 n N/A Sample1 node_11_condensed_3_leaves 7 n N/A Sample1 node_1_condensed_27_leaves 4 n N/A Sample2 1 4 n N/A Sample2 2 5 n N/A Sample2 Wuhan_HBCDC-HB-06_2020 7 n N/A Sample2 Wuhan_HBCDC-HB-02_2020 7 n N/A Sample2 Wuhan_HBCDC-HB-04_2020 7 n N/A Sample2 Shanghai_SH0075_2020 7 n N/A Sample2 Shanghai_SH0010_2020 7 n N/A Sample2 Tianmen_HBCDC-HB-07_2020 7 n N/A Sample2 Shanghai_SH0041_2020 7 n N/A Sample2 India_1-31_2020 7 n N/A Sample2 Shanghai_SH0009_2020 7 n N/A Sample2 Malaysia_MKAK-CL-2020-5096_2020 7 n N/A Sample2 3 7 n N/A Sample2 France_GE1583_2020 12 n N/A Sample2 Georgia_Tb-390_2020 12 n N/A Sample2 Spain_Valencia6_2020 12 n N/A Sample2 Spain_CastillayLeon201437_2020 12 n N/A Sample2 node_12_condensed_6_leaves 12 n N/A Sample2 4 7 n N/A Sample2 Sichuan_IVDC-SC-001_2020 10 n N/A Sample2 USA_CA1_2020 10 n N/A Sample2 USA_IL2_2020 10 n N/A Sample2 Vietnam_CM99_2020 10 n N/A Sample2 node_13_condensed_3_leaves 10 n N/A Sample2 5 7 n N/A Sample2 Shanghai_SH0035_2020 9 n N/A Sample2 Australia_QLD02_2020 9 n N/A Sample2 Australia_QLD03_2020 9 n N/A Sample2 Australia_VIC07_2020 9 n N/A Sample2 6 9 n N/A Sample2 Netherlands_Utrecht_16_2020 10 n N/A Sample2 Netherlands_Utrecht_17_2020 10 n N/A Sample2 node_14_condensed_6_leaves 9 n N/A Sample2 7 7 n N/A Sample2 Shandong_LY003_2020 8 n N/A Sample2 Shandong_LY005_2020 8 n N/A Sample2 node_15_condensed_3_leaves 8 n N/A Sample2 8 7 n N/A Sample2 node_16_condensed_2_leaves 11 n N/A Sample2 England_02_2020 7 n N/A Sample2 9 7 n N/A Sample2 Chongqing_YC01_2020 8 n N/A Sample2 10 8 n N/A Sample2 11 10 n N/A Sample2 USA_CA-CDPH-UC7_2020 13 n N/A Sample2 USA_CA-CDPH-UC9_2020 13 n N/A Sample2 12 10 n N/A Sample2 node_37_condensed_2_leaves 12 n N/A Sample2 Malaysia_MKAK-CL-2020-6430_2020 8 n N/A Sample2 node_17_condensed_3_leaves 8 n N/A Sample2 13 7 n N/A Sample2 Shanghai_SH0059_2020 8 n N/A Sample2 USA_TX1_2020 8 n N/A Sample2 14 8 n N/A Sample2 Japan_TY-WK-012_2020 9 n N/A Sample2 node_26_condensed_2_leaves 9 n N/A Sample2 Shanghai_SH0004_2020 8 n N/A Sample2 Germany_BavPat3_2020 8 n N/A Sample2 Shanghai_SH0005_2020 8 n N/A Sample2 15 7 n N/A Sample2 Yunnan_IVDC-YN-003_2020 8 n N/A Sample2 USA_AZ1_2020 8 n N/A Sample2 Anhui_SZ005_2020 6 n N/A Sample2 16 7 n N/A Sample2 Beijing_233_2020 9 n N/A Sample2 node_18_condensed_3_leaves 9 n N/A Sample2 node_2_condensed_10_leaves 7 n N/A Sample2 Shanghai_SH0007_2020 5 n N/A Sample2 Hangzhou_ZJU-07_2020 5 n N/A Sample2 Wuhan_IPBCAMS-WH-03_2019 5 n N/A Sample2 Wuhan_WH01_2019 5 n N/A Sample2 Wuhan_WIV07_2019 5 n N/A Sample2 Shanghai_SH0093_2020 5 n N/A Sample2 Wuhan_HBCDC-HB-01_2019 5 n N/A Sample2 Wuhan_IPBCAMS-WH-01_2019 5 n N/A Sample2 Wuhan_IVDC-HB-04_2020 5 n N/A Sample2 Wuhan_IVDC-HB-05_2019 5 n N/A Sample2 Wuhan_WIV05_2019 5 n N/A Sample2 Sweden_01_2020 5 n N/A Sample2 Taiwan_2_2020 5 n N/A Sample2 USA_CA2_2020 5 n N/A Sample2 Shanghai_SH0040_2020 5 n N/A Sample2 Singapore_7_2020 5 n N/A Sample2 Australia_VIC02_2020 5 n N/A Sample2 France_IDF0515_2020 5 n N/A Sample2 Hangzhou_ZJU-01_2020 5 n N/A Sample2 Shanghai_SH0037_2020 5 n N/A Sample2 Nepal_61_2020 5 n N/A Sample2 China_WH-09_2020 5 n N/A Sample2 Jiangxi_IVDC-JX-002_2020 5 n N/A Sample2 Zhejiang_WZ-01_2020 5 n N/A Sample2 Japan_KY-V-029_2020 5 n N/A Sample2 Hangzhou_ZJU-03_2020 5 n N/A Sample2 Netherlands_Utrecht_12_2020 5 n N/A Sample2 Singapore_1_2020 5 n N/A Sample2 Taiwan_NTU02_2020 5 n N/A Sample2 England_SHEF-BFD36_2020 5 n N/A Sample2 France_IDF0626_2020 5 n N/A Sample2 Malaysia_MKAK-CL-2020-7554_2020 5 n N/A Sample2 Cambodia_0012_2020 5 n N/A Sample2 17 5 n N/A Sample2 USA_CA-CDPH-UC2_2020 6 n N/A Sample2 USA_CA-CDPH-UC3_2020 6 n N/A Sample2 node_3_condensed_2_leaves 6 n N/A Sample2 18 5 n N/A Sample2 node_4_condensed_2_leaves 6 n N/A Sample2 19 2 y G14948A,A27669G Sample2 Germany_NRW-10_2020 3 n N/A Sample2 Germany_NRW-09_2020 3 n N/A Sample2 Poland_PL_P1_2020 3 n N/A Sample2 20 3 n N/A Sample2 Germany_NRW-04_2020 5 n N/A Sample2 Germany_NRW-07_2020 5 n N/A Sample2 21 5 n N/A Sample2 node_27_condensed_3_leaves 7 n N/A Sample2 node_5_condensed_5_leaves 3 n N/A Sample2 22 5 n N/A Sample2 Malaysia_MKAK-CL-2020-5045_2020 6 n N/A Sample2 node_6_condensed_3_leaves 6 n N/A Sample2 23 5 n N/A Sample2 Jiangsu_JS01_2020 6 n N/A Sample2 Shanghai_SH0031_2020 6 n N/A Sample2 24 5 n N/A Sample2 Australia_NSW02_2020 6 n N/A Sample2 25 6 n N/A Sample2 Hangzhou_ZJU-06_2020 7 n N/A Sample2 26 7 n N/A Sample2 Shanghai_SH0085_2020 9 n N/A Sample2 Shanghai_SH0094_2020 9 n N/A Sample2 27 5 n N/A Sample2 India_1-27_2020 6 n N/A Sample2 Shanghai_SH0011_2020 6 n N/A Sample2 Fujian_13_2020 6 n N/A Sample2 Singapore_11_2020 6 n N/A Sample2 USA_WI1_2020 6 n N/A Sample2 28 5 n N/A Sample2 Wuhan_HBCDC-HB-05_2020 9 n N/A Sample2 Shandong_IVDC-SD-001_2020 9 n N/A Sample2 England_200960041_2020 9 n N/A Sample2 Australia_NSW05_2020 9 n N/A Sample2 29 9 n N/A Sample2 Georgia_Tb-82_2020 11 n N/A Sample2 Australia_NSW09_2020 11 n N/A Sample2 30 11 n N/A Sample2 Canada_BC_25211_2020 12 n N/A Sample2 Kuwait_KU09_2020 12 n N/A Sample2 Kuwait_KU18_2020 11 n N/A Sample2 Kuwait_KU12_2020 11 n N/A Sample2 Australia_NSW06_2020 11 n N/A Sample2 31 9 n N/A Sample2 node_19_condensed_2_leaves 11 n N/A Sample2 32 9 n N/A Sample2 Taiwan_CGMH-CGU-04_2020 12 n N/A Sample2 node_20_condensed_2_leaves 12 n N/A Sample2 Kuwait_KU17_2020 9 n N/A Sample2 33 9 n N/A Sample2 Canada_BC_17397_2020 10 n N/A Sample2 Canada_BC_13297_2020 10 n N/A Sample2 34 9 n N/A Sample2 Australia_QLD09_2020 10 n N/A Sample2 Australia_NSW07_2020 10 n N/A Sample2 35 9 n N/A Sample2 USA_NY1-PV08001_2020 10 n N/A Sample2 Canada_BC_37_0-2_2020 10 n N/A Sample2 Canada_BC_69243_2020 10 n N/A Sample2 36 10 n N/A Sample2 England_200990002_2020 12 n N/A Sample2 Germany_BavPat2_2020 12 n N/A Sample2 37 5 n N/A Sample2 node_7_condensed_3_leaves 7 n N/A Sample2 38 5 n N/A Sample2 Jiangsu_JS02_2020 6 n N/A Sample2 Shanghai_SH0008_2020 6 n N/A Sample2 USA_CA5_2020 6 n N/A Sample2 39 5 n N/A Sample2 Wuhan_WIV02_2019 6 n N/A Sample2 node_8_condensed_2_leaves 6 n N/A Sample2 40 5 n N/A Sample2 node_9_condensed_2_leaves 6 n N/A Sample2 41 5 n N/A Sample2 Japan_Hu_DP_Kng_19-027_2020 6 n N/A Sample2 node_10_condensed_3_leaves 6 n N/A Sample2 42 5 n N/A Sample2 Hangzhou_ZJU-09_2020 6 n N/A Sample2 Australia_VIC01_2020 6 n N/A Sample2 43 5 n N/A Sample2 USA_MA1_2020 6 n N/A Sample2 44 6 n N/A Sample2 Shanghai_SH0058_2020 7 n N/A Sample2 45 7 n N/A Sample2 node_28_condensed_2_leaves 8 n N/A Sample2 node_21_condensed_2_leaves 7 n N/A Sample2 46 5 n N/A Sample2 47 7 n N/A Sample2 France_B2334_2020 9 n N/A Sample2 France_B2340_2020 9 n N/A Sample2 48 7 n N/A Sample2 Georgia_Tb-468_2020 8 n N/A Sample2 Georgia_Tb-537_2020 8 n N/A Sample2 Georgia_Tb-54_2020 8 n N/A Sample2 Italy_SPL1_2020 7 n N/A Sample2 49 5 n N/A Sample2 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10 n N/A Sample3 83 9 n N/A Sample3 Georgia_Tb-673_2020 11 n N/A Sample3 France_B2330_2020 11 n N/A Sample3 France_PL1643_2020 11 n N/A Sample3 France_HF1988_2020 11 n N/A Sample3 France_B2348_2020 11 n N/A Sample3 84 11 n N/A Sample3 France_B2351_2020 12 n N/A Sample3 France_B2344_2020 12 n N/A Sample3 France_B2349_2020 12 n N/A Sample3 85 11 n N/A Sample3 France_IDF2256_2020 12 n N/A Sample3 France_HF1871_2020 12 n N/A Sample3 Netherlands_Haarlem_1363688_2020 11 n N/A Sample3 node_36_condensed_6_leaves 11 n N/A Sample3 node_25_condensed_15_leaves 9 n N/A Sample3 node_11_condensed_3_leaves 8 n N/A Sample3 node_1_condensed_27_leaves 5 n N/A Sample4 1 5 n N/A Sample4 2 6 n N/A Sample4 Wuhan_HBCDC-HB-06_2020 8 n N/A Sample4 Wuhan_HBCDC-HB-02_2020 8 n N/A Sample4 Wuhan_HBCDC-HB-04_2020 8 n N/A Sample4 Shanghai_SH0075_2020 8 n N/A Sample4 Shanghai_SH0010_2020 8 n N/A Sample4 Tianmen_HBCDC-HB-07_2020 8 n N/A Sample4 Shanghai_SH0041_2020 8 n N/A Sample4 India_1-31_2020 8 n N/A Sample4 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11 n N/A Sample4 Canada_BC_13297_2020 11 n N/A Sample4 34 10 n N/A Sample4 Australia_QLD09_2020 11 n N/A Sample4 Australia_NSW07_2020 11 n N/A Sample4 35 10 n N/A Sample4 USA_NY1-PV08001_2020 11 n N/A Sample4 Canada_BC_37_0-2_2020 11 n N/A Sample4 Canada_BC_69243_2020 11 n N/A Sample4 36 11 n N/A Sample4 England_200990002_2020 13 n N/A Sample4 Germany_BavPat2_2020 13 n N/A Sample4 37 6 n N/A Sample4 node_7_condensed_3_leaves 8 n N/A Sample4 38 6 n N/A Sample4 Jiangsu_JS02_2020 7 n N/A Sample4 Shanghai_SH0008_2020 7 n N/A Sample4 USA_CA5_2020 7 n N/A Sample4 39 6 n N/A Sample4 Wuhan_WIV02_2019 7 n N/A Sample4 node_8_condensed_2_leaves 7 n N/A Sample4 40 6 n N/A Sample4 node_9_condensed_2_leaves 7 n N/A Sample4 41 6 n N/A Sample4 Japan_Hu_DP_Kng_19-027_2020 7 n N/A Sample4 node_10_condensed_3_leaves 7 n N/A Sample4 42 6 n N/A Sample4 Hangzhou_ZJU-09_2020 7 n N/A Sample4 Australia_VIC01_2020 7 n N/A Sample4 43 6 n N/A Sample4 USA_MA1_2020 7 n N/A Sample4 44 7 n N/A Sample4 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N/A Sample4 Japan_SMU-0311S3_2020 10 n N/A Sample4 Denmark_SSI-03_2020 10 n N/A Sample4 Netherlands_Gelderland_2_2020 10 n N/A Sample4 Georgia_Tb-273_2020 10 n N/A Sample4 Belgium_SH-03014_2020 10 n N/A Sample4 61 10 n N/A Sample4 62 11 n N/A Sample4 node_38_condensed_2_leaves 13 n N/A Sample4 node_30_condensed_4_leaves 11 n N/A Sample4 63 10 n N/A Sample4 France_HF2174_2020 12 n N/A Sample4 France_GE1977_2020 12 n N/A Sample4 France_HF1684_2020 12 n N/A Sample4 64 12 n N/A Sample4 node_39_condensed_2_leaves 13 n N/A Sample4 Belgium_VAG-03013_2020 10 n N/A Sample4 65 10 n N/A Sample4 Netherlands_Utrecht_1363564_2020 14 n N/A Sample4 node_31_condensed_2_leaves 14 n N/A Sample4 66 10 n N/A Sample4 England_20099107406_2020 11 n N/A Sample4 Georgia_Tb_2020 11 n N/A Sample4 67 10 n N/A Sample4 France_BFC2094_2020 11 n N/A Sample4 France_BFC2147_2020 11 n N/A Sample4 node_32_condensed_4_leaves 11 n N/A Sample4 68 10 n N/A Sample4 Hungary_mbl1_2020 11 n N/A Sample4 node_33_condensed_5_leaves 11 n N/A Sample4 69 10 n N/A Sample4 Nigeria_Lagos01_2020 13 n N/A Sample4 Netherlands_Delft_1363424_2020 13 n N/A Sample4 Denmark_SSI-01_2020 13 n N/A Sample4 England_200990723_2020 13 n N/A Sample4 Switzerland_TI2045_2020 13 n N/A Sample4 Switzerland_1000477377_2020 13 n N/A Sample4 Denmark_SSI-05_2020 13 n N/A Sample4 Chile_Santiago-2_2020 13 n N/A Sample4 Brazil_SPBR-14_2020 13 n N/A Sample4 Finland_FIN-318_2020 13 n N/A Sample4 Netherlands_Limburg_5_2020 13 n N/A Sample4 Belgium_DBA-03032_2020 13 n N/A Sample4 Switzerland_SZ1417_2020 13 n N/A Sample4 Belgium_GMH-03022_2020 13 n N/A Sample4 Netherlands_Utrecht_14_2020 13 n N/A Sample4 Netherlands_Utrecht_1_2020 13 n N/A Sample4 Finland_FIN03032020C_2020 13 n N/A Sample4 Netherlands_Berlicum_1363564_2020 13 n N/A Sample4 70 13 n N/A Sample4 node_40_condensed_2_leaves 15 n N/A Sample4 71 13 n N/A Sample4 node_41_condensed_2_leaves 14 n N/A Sample4 72 13 n N/A Sample4 node_42_condensed_2_leaves 14 n N/A Sample4 73 13 n N/A Sample4 Switzerland_1000477797_2020 14 n N/A Sample4 Brazil_BA-312_2020 14 n N/A Sample4 node_43_condensed_3_leaves 14 n N/A Sample4 74 13 n N/A Sample4 Finland_FIN-313_2020 15 n N/A Sample4 Netherlands_Utrecht_15_2020 15 n N/A Sample4 75 13 n N/A Sample4 Switzerland_GE1422_2020 14 n N/A Sample4 Netherlands_Diemen_1363454_2020 14 n N/A Sample4 node_44_condensed_3_leaves 14 n N/A Sample4 76 13 n N/A Sample4 Switzerland_BE6651_2020 14 n N/A Sample4 Netherlands_NoordHolland_2_2020 14 n N/A Sample4 node_45_condensed_6_leaves 14 n N/A Sample4 Belgium_BC-03016_2020 13 n N/A Sample4 77 13 n N/A Sample4 Switzerland_1000477757_2020 14 n N/A Sample4 Brazil_SPBR-12_2020 14 n N/A Sample4 Germany_Baden-Wuerttemberg-1_2020 14 n N/A Sample4 78 13 n N/A Sample4 node_46_condensed_16_leaves 14 n N/A Sample4 79 13 n N/A Sample4 Belgium_UMF-03025_2020 14 n N/A Sample4 80 14 n N/A Sample4 node_47_condensed_2_leaves 15 n N/A Sample4 node_34_condensed_7_leaves 13 n N/A Sample4 81 10 n N/A Sample4 Netherlands_NoordHolland_3_2020 11 n N/A Sample4 Netherlands_Flevoland_1_2020 11 n N/A Sample4 82 10 n N/A Sample4 NetherlandsL_Houten_1363498_2020 11 n N/A Sample4 Italy_UniSR1_2020 11 n N/A Sample4 France_N1620_2020 11 n N/A Sample4 node_35_condensed_3_leaves 11 n N/A Sample4 83 10 n N/A Sample4 Georgia_Tb-673_2020 12 n N/A Sample4 France_B2330_2020 12 n N/A Sample4 France_PL1643_2020 12 n N/A Sample4 France_HF1988_2020 12 n N/A Sample4 France_B2348_2020 12 n N/A Sample4 84 12 n N/A Sample4 France_B2351_2020 13 n N/A Sample4 France_B2344_2020 13 n N/A Sample4 France_B2349_2020 13 n N/A Sample4 85 12 n N/A Sample4 France_IDF2256_2020 13 n N/A Sample4 France_HF1871_2020 13 n N/A Sample4 Netherlands_Haarlem_1363688_2020 12 n N/A Sample4 node_36_condensed_6_leaves 12 n N/A Sample4 node_25_condensed_15_leaves 10 n N/A Sample4 node_11_condensed_3_leaves 9 n N/A Sample4 node_1_condensed_27_leaves 6 n N/A Sample5 1 5 n N/A Sample5 2 6 n N/A Sample5 Wuhan_HBCDC-HB-06_2020 8 n N/A Sample5 Wuhan_HBCDC-HB-02_2020 8 n N/A Sample5 Wuhan_HBCDC-HB-04_2020 8 n N/A Sample5 Shanghai_SH0075_2020 8 n N/A Sample5 Shanghai_SH0010_2020 8 n N/A Sample5 Tianmen_HBCDC-HB-07_2020 8 n N/A Sample5 Shanghai_SH0041_2020 8 n N/A Sample5 India_1-31_2020 8 n N/A Sample5 Shanghai_SH0009_2020 8 n N/A Sample5 Malaysia_MKAK-CL-2020-5096_2020 8 n N/A Sample5 3 8 n N/A Sample5 France_GE1583_2020 13 n N/A Sample5 Georgia_Tb-390_2020 13 n N/A Sample5 Spain_Valencia6_2020 13 n N/A Sample5 Spain_CastillayLeon201437_2020 13 n N/A Sample5 node_12_condensed_6_leaves 13 n N/A Sample5 4 8 n N/A Sample5 Sichuan_IVDC-SC-001_2020 11 n N/A Sample5 USA_CA1_2020 11 n N/A Sample5 USA_IL2_2020 11 n N/A Sample5 Vietnam_CM99_2020 11 n N/A Sample5 node_13_condensed_3_leaves 11 n N/A Sample5 5 8 n N/A Sample5 Shanghai_SH0035_2020 10 n N/A Sample5 Australia_QLD02_2020 10 n N/A Sample5 Australia_QLD03_2020 10 n N/A Sample5 Australia_VIC07_2020 10 n N/A Sample5 6 10 n N/A Sample5 Netherlands_Utrecht_16_2020 11 n N/A Sample5 Netherlands_Utrecht_17_2020 11 n N/A Sample5 node_14_condensed_6_leaves 10 n N/A Sample5 7 8 n N/A Sample5 Shandong_LY003_2020 9 n N/A Sample5 Shandong_LY005_2020 9 n N/A Sample5 node_15_condensed_3_leaves 9 n N/A Sample5 8 8 n N/A Sample5 node_16_condensed_2_leaves 12 n N/A Sample5 England_02_2020 8 n N/A Sample5 9 8 n N/A Sample5 Chongqing_YC01_2020 9 n N/A Sample5 10 9 n N/A Sample5 11 11 n N/A Sample5 USA_CA-CDPH-UC7_2020 14 n N/A Sample5 USA_CA-CDPH-UC9_2020 14 n N/A Sample5 12 11 n N/A Sample5 node_37_condensed_2_leaves 13 n N/A Sample5 Malaysia_MKAK-CL-2020-6430_2020 9 n N/A Sample5 node_17_condensed_3_leaves 9 n N/A Sample5 13 8 n N/A Sample5 Shanghai_SH0059_2020 9 n N/A Sample5 USA_TX1_2020 9 n N/A Sample5 14 9 n N/A Sample5 Japan_TY-WK-012_2020 10 n N/A Sample5 node_26_condensed_2_leaves 10 n N/A Sample5 Shanghai_SH0004_2020 9 n N/A Sample5 Germany_BavPat3_2020 9 n N/A Sample5 Shanghai_SH0005_2020 9 n N/A Sample5 15 8 n N/A Sample5 Yunnan_IVDC-YN-003_2020 9 n N/A Sample5 USA_AZ1_2020 9 n N/A Sample5 Anhui_SZ005_2020 7 n N/A Sample5 16 8 n N/A Sample5 Beijing_233_2020 10 n N/A Sample5 node_18_condensed_3_leaves 10 n N/A Sample5 node_2_condensed_10_leaves 8 n N/A Sample5 Shanghai_SH0007_2020 6 n N/A Sample5 Hangzhou_ZJU-07_2020 6 n N/A Sample5 Wuhan_IPBCAMS-WH-03_2019 6 n N/A Sample5 Wuhan_WH01_2019 6 n N/A Sample5 Wuhan_WIV07_2019 6 n N/A Sample5 Shanghai_SH0093_2020 6 n N/A Sample5 Wuhan_HBCDC-HB-01_2019 6 n N/A Sample5 Wuhan_IPBCAMS-WH-01_2019 6 n N/A Sample5 Wuhan_IVDC-HB-04_2020 6 n N/A Sample5 Wuhan_IVDC-HB-05_2019 6 n N/A Sample5 Wuhan_WIV05_2019 6 n N/A Sample5 Sweden_01_2020 6 n N/A Sample5 Taiwan_2_2020 6 n N/A Sample5 USA_CA2_2020 6 n N/A Sample5 Shanghai_SH0040_2020 6 n N/A Sample5 Singapore_7_2020 6 n N/A Sample5 Australia_VIC02_2020 6 n N/A Sample5 France_IDF0515_2020 6 n N/A Sample5 Hangzhou_ZJU-01_2020 6 n N/A Sample5 Shanghai_SH0037_2020 6 n N/A Sample5 Nepal_61_2020 6 n N/A Sample5 China_WH-09_2020 6 n N/A Sample5 Jiangxi_IVDC-JX-002_2020 6 n N/A Sample5 Zhejiang_WZ-01_2020 6 n N/A Sample5 Japan_KY-V-029_2020 6 n N/A Sample5 Hangzhou_ZJU-03_2020 6 n N/A Sample5 Netherlands_Utrecht_12_2020 6 n N/A Sample5 Singapore_1_2020 6 n N/A Sample5 Taiwan_NTU02_2020 6 n N/A Sample5 England_SHEF-BFD36_2020 6 n N/A Sample5 France_IDF0626_2020 6 n N/A Sample5 Malaysia_MKAK-CL-2020-7554_2020 6 n N/A Sample5 Cambodia_0012_2020 6 n N/A Sample5 17 6 n N/A Sample5 USA_CA-CDPH-UC2_2020 7 n N/A Sample5 USA_CA-CDPH-UC3_2020 7 n N/A Sample5 node_3_condensed_2_leaves 7 n N/A Sample5 18 6 n N/A Sample5 node_4_condensed_2_leaves 7 n N/A Sample5 19 3 y G14948A,A23013G,A27669G Sample5 Germany_NRW-10_2020 4 n N/A Sample5 Germany_NRW-09_2020 4 n N/A Sample5 Poland_PL_P1_2020 4 n N/A Sample5 20 4 n N/A Sample5 Germany_NRW-04_2020 6 n N/A Sample5 Germany_NRW-07_2020 6 n N/A Sample5 21 6 n N/A Sample5 node_27_condensed_3_leaves 8 n N/A Sample5 node_5_condensed_5_leaves 4 n N/A Sample5 22 6 n N/A Sample5 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