Mercurial > repos > iuc > usher_matutils

changeset 2:e0a0a473fc1e draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/usher commit 5de7b91f2bda9c351f9512601f899248b7278924
author iuc
date Sun, 17 Mar 2024 18:10:36 +0000
parents 52fd1d491417
children
files macros.xml matutils.xml
diffstat 2 files changed, 6 insertions(+), 9 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Sun Dec 19 15:52:45 2021 +0000
+++ b/macros.xml	Sun Mar 17 18:10:36 2024 +0000
@@ -1,13 +1,10 @@
 <macros>
     <token name="@TOOL_VERSION@">0.2.1</token>
     <token name="@GALAXY_TOOL_VERSION@">galaxy0</token>
-    <xml name="edam_ontology">
-        <edam_topics>                                                                                  
-            <edam_topic>topic_0194</edam_topic>
-        </edam_topics>
-        <edam_operations>
-            <edam_operation>operation_0540</edam_operation>
-        </edam_operations>
+    <xml name="xrefs">
+        <xrefs>
+            <xref type="bio.tools">usher</xref>
+        </xrefs>
     </xml>
     <xml name="requirements">
         <requirements>
--- a/matutils.xml	Sun Dec 19 15:52:45 2021 +0000
+++ b/matutils.xml	Sun Mar 17 18:10:36 2024 +0000
@@ -3,7 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
-    <expand macro='edam_ontology' />
+    <expand macro="xrefs"/>
     <expand macro='requirements' />
     <version_command>usher --version</version_command>
     <command detect_errors='exit_code'><![CDATA[
@@ -281,7 +281,7 @@
         <data name="aberrant_stats" format="tabular" from_work_dir='aberrant_stats.tabular' label="${tool.name} on ${on_string}: aberrant stats">
             <filter>matutils_mode['options_mode'] == 'summary' and 'aberrant' in matutils_mode['summary_options']</filter>
         </data>  
-        <data name="output_mat" format="protobuf3" from_work_dir='output_mat.pb' label="${tool.name} on ${on_string}: mutation annotated tree">
+        <data name="output_mat" format="protobuf3" from_work_dir='output_mat.pb' label="${tool.name} on ${on_string}: mutation tree">
             <filter>matutils_mode['options_mode'] == 'annotate' or matutils_mode['options_mode'] == 'mask'</filter>
         </data>  
         <data name="total_parsimony_tree" format="txt" from_work_dir='output_stdout.txt' label="${tool.name} on ${on_string}: parsimony tree">