Mercurial > repos > iuc > vardict_java
view split.py @ 3:e0734e88a104 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vardict commit 80e3742f499e8efabad1fe7627201466d0bdd190"
author | iuc |
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date | Thu, 27 Jan 2022 15:19:23 +0000 |
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import sys fai = sys.argv[1] chunk_size = int(sys.argv[2]) overlap = int(sys.argv[3]) # Base pairs with open(fai, 'r') as infile: for line in infile: name = line.split('\t')[0] stop = int(line.split('\t')[1]) start = 1 while start < stop: start = max(1, start - overlap) print('\t'.join([name, str(start), str(min(start + chunk_size, stop))])) start += chunk_size