Mercurial > repos > iuc > vcf2maf

annotate tool-data/vep_versioned_annotation_cache.loc.sample @ 0:2973994fecd6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
author iuc
date Tue, 28 Jun 2022 21:07:04 +0000
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2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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1 #This file describes vep cache data and its metadata available on the server.
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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2 #The data table has the format (white space characters are TAB characters):
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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3 #
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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4 #<value> <dbkey> <version> <cachetype> <name> <species> <path>
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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5 #
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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6 #So, vep_versioned_annotation_cache.loc tables could look like this:
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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7 #
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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8 #homo_sapiens_vep_105_GRCh38 hg38 105 default Homo sapiens hg38 (V105) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/default
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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9 #homo_sapiens_refseq_vep_105_GRCh38 hg38 105 refseq Homo sapiens hg38 (V105, Refseq) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/refseq
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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10 #homo_sapiens_merged_vep_105_GRCh38 hg38 105 merged Homo sapiens hg38 (V105, Merged) homo_sapiens /path/to/vep_versioned_annotation_cache/105/hg38/merged
2973994fecd6 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vcf2maf commit 30046d5e0df4d80ac687edd03cf44b2afaa04550
iuc
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11 #