Mercurial > repos > iuc > virannot_blast2tsv

comparison virAnnot_blast2tsv.xml @ 5:5c53a5baaf72 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/virAnnot commit 31e7eb490fbaa2b1f34f0e0f154a6f82ad2f2f82
author iuc
date Mon, 04 Aug 2025 19:14:12 +0000
parents bb29ae8708b5
children
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4:bb29ae8708b5 5:5c53a5baaf72
1 <tool id="virannot_blast2tsv" name="virAnnot Blast2tsv" version="@TOOL_VERSION@+galaxy0" profile="21.05"> 1 <tool id="virannot_blast2tsv" name="virAnnot Blast2tsv" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
2 <description>convert XML blast results to tabular file with taxonomic informations</description> 2 <description>convert XML blast results to tabular file with taxonomic informations</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="xrefs"/> 6 <expand macro="xrefs"/>
46 <test> 46 <test>
47 <param name="blast_xml" value="blast2tsv_input.xml"/> 47 <param name="blast_xml" value="blast2tsv_input.xml"/>
48 <param name="contigs" value="blast2tsv_contigs.fa"/> 48 <param name="contigs" value="blast2tsv_contigs.fa"/>
49 <param name="blast_type" value="TBLASTX"/> 49 <param name="blast_type" value="TBLASTX"/>
50 <param name="max_evalue" value="0.001"/> 50 <param name="max_evalue" value="0.001"/>
51 <output name="out_annotation" file="blast2tsv_output.tab"> 51 <output name="out_annotation">
52 <assert_contents> 52 <assert_contents>
53 <has_n_columns n="16" /> 53 <has_n_columns n="16" />
54 <has_n_lines n="13" /> 54 <has_n_lines n="13" />
55 <has_text text="NODE_13_length_295_cov_0.945833" /> 55 <has_text text="NODE_13_length_295_cov_0.945833" />
56 </assert_contents> 56 </assert_contents>
60 <param name="blast_xml" value="blast2tsv_input.xml"/> 60 <param name="blast_xml" value="blast2tsv_input.xml"/>
61 <param name="contigs" value="blast2tsv_contigs.fa"/> 61 <param name="contigs" value="blast2tsv_contigs.fa"/>
62 <param name="blast_type" value="TBLASTX"/> 62 <param name="blast_type" value="TBLASTX"/>
63 <param name="max_evalue" value="0.001"/> 63 <param name="max_evalue" value="0.001"/>
64 <param name="read_nb" value="blast2tsv_read_nb.tab"/> 64 <param name="read_nb" value="blast2tsv_read_nb.tab"/>
65 <output name="out_annotation" file="blast2tsv_output_with_rn.tab"> 65 <output name="out_annotation">
66 <assert_contents> 66 <assert_contents>
67 <has_text text="pfam13603" /> 67 <has_text text="pfam13603" />
68 <has_n_lines n="13" /> 68 <has_n_lines n="13" />
69 <has_n_columns n="16"/>
69 </assert_contents> 70 </assert_contents>
70 </output> 71 </output>
71 <output name="out_annotation" file="blast2tsv_reads_with_rn.txt"> 72 <output name="out_annotation">
72 <assert_contents> 73 <assert_contents>
73 <has_text text="Desulfovibrio" /> 74 <has_text text="Desulfovibrio" />
74 <has_n_lines n="13" /> 75 <has_n_lines n="13" />
76 <has_n_columns n="16"/>
75 </assert_contents> 77 </assert_contents>
76 </output> 78 </output>
77 </test> 79 </test>
78 </tests> 80 </tests>
79 <help><![CDATA[ 81 <help><![CDATA[