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comparison shuffling.xml @ 3:4258854759ba draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 29f6e6424a37947adbe1eba92f0e7d3c83efc042-dirty
author iuc
date Tue, 01 Mar 2016 07:07:03 -0500
parents f29e21388219
children
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2:f29e21388219 3:4258854759ba
1 <tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.1"> 1 <tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.0">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>vsearch_macros.xml</import> 4 <import>vsearch_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
9 <command> 9 <command>
10 <![CDATA[ 10 <![CDATA[
11 vsearch 11 vsearch
12 @GENERAL@ 12 @GENERAL@
13 --output "$outfile" 13 --output "$outfile"
14 --seed "$seed" 14 --randseed "$randseed"
15 --shuffle "$infile" 15 --shuffle "$infile"
16 #if str( $topn ): 16 #if str( $topn ):
17 --topn "$topn" 17 --topn "$topn"
18 #end if 18 #end if
19 ]]> 19 ]]>
20 </command> 20 </command>
21 <inputs> 21 <inputs>
22 <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--shuffle)" /> 22 <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--shuffle)" />
23 <param name="seed" type="integer" value="0" label="Seed" 23 <param argument="--randseed" type="integer" value="0" label="Seed"
24 help="Zero to use random data source. (--seed)"/> 24 help="Zero to use random data source."/>
25 <expand macro="topn" /> 25 <expand macro="topn" />
26 </inputs> 26 </inputs>
27 <outputs> 27 <outputs>
28 <data name="outfile" format="fasta" label="${tool.name} on ${on_string}" /> 28 <data name="outfile" format="fasta" label="${tool.name} on ${on_string}" />
29 </outputs> 29 </outputs>
30 <tests> 30 <tests>
31 <test> 31 <test>
32 <param name="infile" value="db.fasta" ftype="fasta" /> 32 <param name="infile" value="db.fasta" ftype="fasta" />
33 <param name="seed" value="1"/> 33 <param name="randseed" value="1"/>
34 <param name="topn" value="5"/> 34 <param name="topn" value="5"/>
35 <output name="outfile" file="shuffling_result1.fasta" ftype="fasta" /> 35 <output name="outfile" file="shuffling_result1.fasta" ftype="fasta" />
36 </test> 36 </test>
37 </tests> 37 </tests>
38 <help> 38 <help>