Mercurial > repos > iuc > vsearch

diff shuffling.xml @ 3:4258854759ba draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 29f6e6424a37947adbe1eba92f0e7d3c83efc042-dirty
author iuc
date Tue, 01 Mar 2016 07:07:03 -0500
parents f29e21388219
children
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--- a/shuffling.xml	Thu Dec 17 12:53:39 2015 -0500
+++ b/shuffling.xml	Tue Mar 01 07:07:03 2016 -0500
@@ -1,4 +1,4 @@
-<tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.1">
+<tool id="vsearch_shuffling" name="VSearch shuffling" version="@VERSION@.0">
     <description></description>
     <macros>
         <import>vsearch_macros.xml</import>
@@ -11,7 +11,7 @@
     vsearch
         @GENERAL@
         --output "$outfile"
-        --seed "$seed"
+        --randseed "$randseed"
         --shuffle "$infile"
         #if str( $topn ):
             --topn "$topn"
@@ -20,8 +20,8 @@
     </command>
     <inputs>
         <param name="infile" type="data" format="fasta" label="Select your FASTA file" help="(--shuffle)" />
-        <param name="seed" type="integer" value="0" label="Seed"
-            help="Zero to use random data source. (--seed)"/>
+        <param argument="--randseed" type="integer" value="0" label="Seed"
+            help="Zero to use random data source."/>
         <expand macro="topn" />
     </inputs>
     <outputs>
@@ -30,7 +30,7 @@
     <tests>
         <test>
             <param name="infile" value="db.fasta" ftype="fasta" />
-            <param name="seed" value="1"/>
+            <param name="randseed" value="1"/>
             <param name="topn" value="5"/>
             <output name="outfile" file="shuffling_result1.fasta" ftype="fasta" />
         </test>