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comparison sorting.xml @ 2:f29e21388219 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 64c1c4c664c6a131d897f574dc849f5668fa97d2
author iuc
date Thu, 17 Dec 2015 12:53:39 -0500
parents 8c4e2933a17a
children 4258854759ba
comparison
equal deleted inserted replaced
1:8c4e2933a17a 2:f29e21388219
1 <tool id="vsearch_sorting" name="VSearch sorting" version="@VERSION@.1"> 1 <tool id="vsearch_sorting" name="VSearch sorting" version="@VERSION@.2">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <import>vsearch_macros.xml</import> 4 <import>vsearch_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
12 @GENERAL@ 12 @GENERAL@
13 #if $sorting_mode.sorting_mode_select == 'sortbylength': 13 #if $sorting_mode.sorting_mode_select == 'sortbylength':
14 --sortbylength "$sorting_mode.infile" 14 --sortbylength "$sorting_mode.infile"
15 #else: 15 #else:
16 --sortbysize "$sorting_mode.infile" 16 --sortbysize "$sorting_mode.infile"
17 #if $sorting_mode.minsize: 17 #if str( $sorting_mode.minsize ):
18 --minsize $sorting_mode.minsize 18 --minsize "$sorting_mode.minsize"
19 #end if 19 #end if
20 #if $sorting_mode.maxsize: 20 #if str( $sorting_mode.maxsize ):
21 --maxsize $sorting_mode.maxsize 21 --maxsize "$sorting_mode.maxsize"
22 #end if 22 #end if
23 #end if 23 #end if
24 --output $outfile 24 --output "$outfile"
25 #if $relabel: 25 #if $relabel:
26 --relabel "$relabel" 26 --relabel "$relabel"
27 #end if 27 #end if
28 $sizeout 28 $sizeout
29 #if $topn: 29 #if str( $topn ):
30 --topn $topn 30 --topn "$topn"
31 #end if 31 #end if
32 32
33 ]]> 33 ]]>
34 </command> 34 </command>
35 <inputs> 35 <inputs>
110 --topn INT output just top n seqs after sorting 110 --topn INT output just top n seqs after sorting
111 111
112 112
113 @EXTERNAL_DOCUMENTATION@ 113 @EXTERNAL_DOCUMENTATION@
114 114
115 -------
116
117 @REFERENCES@
118
119 115
120 ]]> 116 ]]>
121 </help> 117 </help>
122 <expand macro="citations" /> 118 <expand macro="citations" />
123 </tool> 119 </tool>