diff sorting.xml @ 2:f29e21388219 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/vsearch commit 64c1c4c664c6a131d897f574dc849f5668fa97d2
author iuc
date Thu, 17 Dec 2015 12:53:39 -0500
parents 8c4e2933a17a
children 4258854759ba
line wrap: on
line diff
--- a/sorting.xml	Wed Aug 26 13:34:22 2015 -0400
+++ b/sorting.xml	Thu Dec 17 12:53:39 2015 -0500
@@ -1,4 +1,4 @@
-<tool id="vsearch_sorting" name="VSearch sorting" version="@VERSION@.1">
+<tool id="vsearch_sorting" name="VSearch sorting" version="@VERSION@.2">
     <description></description>
     <macros>
         <import>vsearch_macros.xml</import>
@@ -14,20 +14,20 @@
             --sortbylength "$sorting_mode.infile"
         #else:
             --sortbysize "$sorting_mode.infile"
-            #if $sorting_mode.minsize:
-                --minsize $sorting_mode.minsize
+            #if str( $sorting_mode.minsize ):
+                --minsize "$sorting_mode.minsize"
             #end if
-            #if $sorting_mode.maxsize:
-                --maxsize $sorting_mode.maxsize
+            #if str( $sorting_mode.maxsize ):
+                --maxsize "$sorting_mode.maxsize"
             #end if
         #end if
-        --output $outfile
+        --output "$outfile"
         #if $relabel:
             --relabel "$relabel"
         #end if
         $sizeout
-        #if $topn:
-            --topn $topn
+        #if str( $topn ):
+            --topn "$topn"
         #end if
 
 ]]>
@@ -112,10 +112,6 @@
 
 @EXTERNAL_DOCUMENTATION@
 
--------
-
-@REFERENCES@
-
 
 ]]>
     </help>