annotate xpath @ 0:7e01c6a6dbed draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
author iuc
date Fri, 10 Jun 2016 15:08:32 -0400
parents
children 1ba5c66e39c9
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
parents:
diff changeset
1 #!/usr/bin/perl -w
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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diff changeset
2 eval 'exec /usr/bin/perl -w -S $0 ${1+"$@"}'
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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3 if 0; # not running under some shell
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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4 use strict;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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5
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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6 $| = 1;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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7
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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8 use XML::XPath;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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9
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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10 my @paths;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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11 my $pipeline;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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12 my $SUFFIX = "\n";
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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13 my $PREFIX = "";
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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14 my $quiet = 0;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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15
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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16
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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17 PARSE: while ((@ARGV >= 1) && ($ARGV[0] =~ /^-./ )) {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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18 OPTIONS: {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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19 if ($ARGV[0] eq "-e") {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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20 shift;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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21 push @paths, shift;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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22 last OPTIONS;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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23 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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24 if ($ARGV[0] eq "-p") {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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25 shift;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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26 $PREFIX = shift;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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27 last OPTIONS;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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28 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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29 if ($ARGV[0] eq "-s") {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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30 shift;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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31 $SUFFIX = shift;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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32 last OPTIONS;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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33 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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34 if ($ARGV[0] eq "-q") {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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35 $quiet = 1;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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36 shift;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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37 last OPTIONS;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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38 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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39 print STDERR "Unknown option ignore: ", shift;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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40 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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41 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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42
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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43 unless (@paths >= 1) {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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44 print STDERR qq(Usage:
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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45 $0 [options] -e query [-e query...] [filename...]
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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46
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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47 If no filenams are given, supply XML on STDIN.
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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48 You must provide at least one query. Each supplementary
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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49 query is done in order, the previous query giving the
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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50 context of the next one.
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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51
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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52 Options:
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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53
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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54 -q quiet. Only output the resulting PATH
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
iuc
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55 -s suffix use suffix instead of linefeed.
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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56 -p postfix use prefix instead of nothing.
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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57 );
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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58 exit;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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59 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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60
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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61 do
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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62 {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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63 my $xpath;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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64 my @curpaths = @paths;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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65 my $filename;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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66 if (@ARGV >= 1) {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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67 $filename = shift @ARGV;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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68 $xpath = XML::XPath->new(filename => $filename);
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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69 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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70 else {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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71 $filename = 'stdin';
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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72 $xpath = XML::XPath->new(ioref => \*STDIN);
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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73 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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74
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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75 my $nodes = $xpath->find(shift @curpaths);
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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76
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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77 if ($nodes->isa('XML::XPath::NodeSet')) {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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78 while (@curpaths >= 1) {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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79 $nodes = find_more($xpath, shift @curpaths, $nodes);
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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80 last unless $nodes->isa('XML::XPath::NodeSet');
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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81 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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82 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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83
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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84 if ($nodes->isa('XML::XPath::NodeSet')) {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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85 if ($nodes->size) {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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86 print STDERR "Found ", $nodes->size, " nodes in $filename:\n" unless $quiet;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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87 foreach my $node ($nodes->get_nodelist) {
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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88 print STDERR "-- NODE --\n" unless $quiet;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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89 print $PREFIX, $node->toString, $SUFFIX;
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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90 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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91 }
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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92 else {
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93 print STDERR "No nodes found in $filename\n" unless $quiet;
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94 }
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95 }
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96 else {
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97 print STDERR "Query didn't return a nodeset. Value: ";
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98 print $nodes->value, "\n";
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99 }
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100
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101 } until (@ARGV < 1);
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102
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103 exit;
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104
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105 sub find_more {
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106 my $xpath = shift;
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107 my $find = shift;
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108 my ($nodes) = @_;
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109
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110 my $newnodes = XML::XPath::NodeSet->new;
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111
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112 foreach my $node ($nodes->get_nodelist) {
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113 my $new = $xpath->find($find, $node);
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114 if ($new->isa('XML::XPath::NodeSet')) {
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115 $newnodes->append($new);
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116 }
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117 else {
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118 warn "Not a nodeset: ", $new->value, "\n";
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119 }
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120 }
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121
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122 return $newnodes;
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123 }
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124
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125 __END__
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126
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127 =head1 NAME
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128
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129 xpath - a script to query XPath statements in XML documents.
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130
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131 =head1 SYNOPSIS
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132
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133 B<xpath [-s suffix] [-p prefix] [-q] -e query [-e query] ... [file] ...>
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134
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135 =head1 DESCRIPTION
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136
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137 B<xpath> uses the L<XML::XPath|XML::XPath> perl module to make XPath queries
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138 to any XML document. The L<XML::XPath|XML::XPath> module aims to comply exactly
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139 to the XPath specification at C<http://www.w3.org/TR/xpath> and yet
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140 allows extensions to be added in the form of functions.
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141
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142 The script takes any number of XPath pointers and tries to apply them
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143 to each XML document given on the command line. If no file arguments
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144 are given, the query is done using C<STDIN> as an XML document.
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145
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146 When multiple queries exist, the result of the last query is used as
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147 context for the next query and only the result of the last one is output.
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148 The context of the first query is always the root of the current document.
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149
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150 =head1 OPTIONS
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151
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152 =head2 B<-q>
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153
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154 Be quiet. Output only errors (and no separator) on stderr.
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155
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156 =head2 B<-s suffix>
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157
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158 Place C<suffix> at the end of each entry. Default is a linefeed.
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159
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160 =head2 B<-p prefix>
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161
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162 Place C<prefix> preceding each entry. Default is nothing.
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163
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164 =head1 BUGS
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165
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166 The author of this man page is not very fluant in english. Please,
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167 send him (L<fabien@tzone.org>) any corrections concerning this text.
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168
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169 See also L<XML::XPath(3pm)>.
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170
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171 =head1 SEE ALSO
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172
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173 L<XML::XPath(3pm)>.
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174
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175 =head1 HISTORY
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176
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177 This module is copyright 2000 Fastnet Software Ltd. This is free
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178 software, and as such comes with NO WARRANTY. No dates are used in this
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179 module. You may distribute this module under the terms of either the
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180 Gnu GPL, or under specific licencing from Fastnet Software Ltd.
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181 Special free licencing consideration will be given to similarly free
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182 software. Please don't flame me for this licence - I've put a lot of
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183 hours into this code, and if someone uses my software in their product
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184 I expect them to have the courtesy to contact me first.
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185
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186 Full support for this module is available from Fastnet Software Ltd on
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187 a pay per incident basis. Alternatively subscribe to the Perl-XML
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188 mailing list by mailing lyris@activestate.com with the text:
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189
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190 SUBSCRIBE Perl-XML
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191
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192 in the body of the message. There are lots of friendly people on the
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193 list, including myself, and we'll be glad to get you started.
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194
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195 Matt Sergeant, matt@sergeant.org
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196
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197 This man page was added as well as some serious modifications to the script
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198 by Fabien Ninoles <fabien@debian.org> for the Debian Project.
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199
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200 =cut
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201