Mercurial > repos > iuc > xpath

annotate xpath.xml @ 0:7e01c6a6dbed draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
author iuc
date Fri, 10 Jun 2016 15:08:32 -0400
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0
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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1 <?xml version="1.0"?>
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2 <tool id="xpath" name="XPath" version="@WRAPPER_VERSION@.0">
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3 <description>compute xpath expressions on XML data</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <expand macro="stdio"/>
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9 <command interpreter="bash"><![CDATA[xpath
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10 -q
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11 -e '$expression' $input > $output
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12 ]]></command>
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13 <inputs>
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14 <param name="input" type="data" format="xml" label="Input XML data"/>
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15 <param name="expression" type="text" label="XPath Query">
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16 <sanitizer>
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17 <valid>
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18 <add value="&quot;"/>
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19 <add value="["/>
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20 <add value="]"/>
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21 <add value="@"/>
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22 </valid>
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23 </sanitizer>
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24 </param>
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25 </inputs>
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26 <outputs>
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27 <!-- TODO: sometimes there's text output (e.g. text() queries) -->
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28 <data format="xml" name="output" label="XPath expression on $input.name"/>
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29 </outputs>
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30 <tests>
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31 <test>
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32 <param name="input" value="test.xml"/>
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33 <param name="expression" value="//b[@attr=&quot;value&quot;]" />
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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34 <output name="output" file="1.xml"/>
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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35 </test>
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36 <test>
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37 <param name="input" value="test.xml"/>
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38 <param name="expression" value="//b[@attr]" />
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39 <output name="output" file="2.xml"/>
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40 </test>
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41 <test>
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42 <param name="input" value="test.xml"/>
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43 <param name="expression" value="//b/text()" />
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44 <output name="output" file="3.xml"/>
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45 </test>
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46 </tests>
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47 <help><![CDATA[
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48 **What it does**
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49
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50 Query XML files with XPath expressions.
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51
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52 For an example input file::
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53
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54 <root>
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55 <IdList>
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56 <Id>1234</Id>
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57 <Id>1235</Id>
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58 <Id>1236</Id>
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59 <Id>1237</Id>
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60 </IdList>
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61 </root>
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62
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63 One could query out the IDs specifically with a query like::
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64
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65 //Id/text()
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66
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67 **XPath Expressions**
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68
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69 There are many helpful tutorials on the internet for XPath expressions.
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70 `Wikipedia <https://en.wikipedia.org/wiki/XPath>`__ has a number of good
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71 examples.
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72
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73 **Some More Examples**
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74
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75 For an XML document like the following::
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76
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77 <root>
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78 <a>
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79 <b attr="value">1</b>
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80 <b attr="none">2</b>
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81 <b>3</b>
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82 </a>
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83 <c>
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84 <d>4</d>
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85 <e>5</e>
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86 </c>
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87 </root>
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88
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89 Here are some example queries and their outputs:
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90
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91 +====================+===================================================+
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92 | Query | Result |
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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93 +--------------------+---------------------------------------------------+
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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94 | //b[@attr="value"] | <b attr="value">1</b> |
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95 +--------------------+---------------------------------------------------+
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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96 | //b[@attr] | <b attr="value">1</b><b attr="none">2</b> |
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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97 +--------------------+---------------------------------------------------+
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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98 | //b | <b attr="value">1</b><b attr="none">2</b><b>3</b> |
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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99 +--------------------+---------------------------------------------------+
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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100 | //b/text() | 1\n2\n3 |
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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101 +--------------------+---------------------------------------------------+
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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102 | /root/*/*/text() | 1\n2\n3\n4\n5 |
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103 +--------------------+---------------------------------------------------+
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104
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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105
7e01c6a6dbed planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/xpath commit e0575333e6f08ef02fc66c2764b43ebd15c6b04b
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106
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107 @ATTRIBUTION@
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108 ]]></help>
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109 <citations>
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110 </citations>
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111 </tool>