<tool id="bedGraphToBigWig" name="Convert a BED File to a BigWig" version="1.2">
    <description>Convert Ribosome Profile BED File to a BigWig</description>
    <command><![CDATA[
        $__tool_directory__/bedGraphToBigWig ${input1} ${input2} ${output1}
    ]]></command>
    <inputs>
        <param name="input1" type="data" format="bed" label="Bed File" />
        <param name="input2" type="data" format="tabular" label="Chromosome Sizes" help="Check out 'Get Chromosome Sizes' to fill this parameter"/>
    </inputs>
    <outputs>
       <data name="output1" format="bigwig"/>
    </outputs>
    <tests>
        <test>
            <param name="input1" value="test.bed" ftype="bed" />
            <param name="input2" value="test.chrom.sizes" ftype="tabular" />
            <output name="output1" file="test.bw" ftype="bigwig" lines_diff="4" />
        </test>
    </tests>
    <help>

    </help>
    <citations/>
</tool>