Mercurial > repos > jackcurragh > ribogalaxy_bedgraphtobigwig

changeset 0:954fe50ebd55 draft

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Uploaded
author jackcurragh
date Mon, 04 Apr 2022 09:54:12 +0000
parents
children efb0f693d8b1
files bedGraphToBigWig/bedGraphToBigWig bedGraphToBigWig/bedGraphToBigWig.xml bedGraphToBigWig/run_bedgraph_to_bigwig.sh bedGraphToBigWig/test-data/test.bed bedGraphToBigWig/test-data/test.bw bedGraphToBigWig/test-data/test.chrom.sizes
diffstat 6 files changed, 6796 insertions(+), 0 deletions(-) [+]
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Binary file bedGraphToBigWig/bedGraphToBigWig has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bedGraphToBigWig/bedGraphToBigWig.xml	Mon Apr 04 09:54:12 2022 +0000
@@ -0,0 +1,24 @@
+<tool id="bedGraphToBigWig" name="Convert a bed file to a BigWig" version="1.0">
+    <description>Converting your ribosome profile bed file to a bigwig which is used for track creation on GWIPS-Viz</description>
+    <command><![CDATA[
+        $__tool_directory__/bedGraphToBigWig ${input1} ${input2} ${output1}
+    ]]></command>
+    <inputs>
+        <param name="input1" type="data" format="bed" label="Bed File" />
+        <param name="input2" type="data" format="tabular" label="Chromosome Sizes" />
+    </inputs>
+    <outputs>
+       <data name="output1" format="bigwig"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input1" value="test.bed" ftype="bed" />
+            <param name="input2" value="test.chrom.sizes" ftype="tabular" />
+            <output name="output1" file="test.bw" ftype="bigwig" lines_diff="4" />
+        </test>
+    </tests>
+    <help>
+
+    </help>
+    <citations/>
+</tool>
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bedGraphToBigWig/run_bedgraph_to_bigwig.sh	Mon Apr 04 09:54:12 2022 +0000
@@ -0,0 +1,2 @@
+#!usr/bin/env bash 
+
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
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