Mercurial > repos > jackcurragh > ribogalaxy_bedtools_genomcov

changeset 10:4371d34bfd84 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jackcurragh
date Fri, 27 Jan 2023 09:42:28 +0000
parents 9baff1cd6af2
children dd86f2ed6383
files bedtools_genomecov/genomeCoverageBed.xml bedtools_genomecov/macros.xml
diffstat 2 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/bedtools_genomecov/genomeCoverageBed.xml	Thu Jan 26 15:14:08 2023 +0000
+++ b/bedtools_genomecov/genomeCoverageBed.xml	Fri Jan 27 09:42:28 2023 +0000
@@ -33,6 +33,7 @@
 $five
 $three
 > '$output'
+export LC_COLLATE=C; sort -k1,1 -k2,2n '$output' > '${output}.tmp' && mv '${output}.tmp' '$output'
     ]]></command>
     <inputs>
         <conditional name="input_type">
--- a/bedtools_genomecov/macros.xml	Thu Jan 26 15:14:08 2023 +0000
+++ b/bedtools_genomecov/macros.xml	Fri Jan 27 09:42:28 2023 +0000
@@ -10,7 +10,7 @@
             <xref type="bio.tools">bedtools</xref>
         </xrefs>
     </xml>
-    <token name="@TOOL_VERSION@">2.30.0</token>
+    <token name="@TOOL_VERSION@">2.30.1</token>
     <token name="@SAMTOOLS_VERSION@">1.9</token>
     <token name="@STD_BEDTOOLS_INPUTS@">bed,bedgraph,gff,vcf,encodepeak</token>
     <token name="@STD_BEDTOOLS_INPUT_LABEL@">BED/bedGraph/GFF/VCF/EncodePeak</token>