changeset 6:59d5cc7095f7 draft

Uploaded
author jackcurragh
date Fri, 27 May 2022 11:58:00 +0000
parents f7beecae0315
children f2b2946ccde1
files bedtools_genomecov/macros.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/bedtools_genomecov/macros.xml	Fri May 27 11:51:43 2022 +0000
+++ b/bedtools_genomecov/macros.xml	Fri May 27 11:58:00 2022 +0000
@@ -67,22 +67,22 @@
             label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage."
             help="If set, the coverage will be calculated based the spliced intervals only. For BAM files, this inspects the CIGAR N operation to infer the blocks for computing coverage. For BED12 files, this inspects the BlockCount, BlockStarts, and BlockEnds fields (i.e., columns 10,11,12). If this option is not set, coverage will be calculated based on the interval's START/END coordinates, and would include introns in the case of RNAseq data." />
     </xml>
-    <!-- <xml name="input_conditional_genome_file" token_optional="false" token_help="">
+    <xml name="input_conditional_genome_file" token_optional="false" token_help="">
         <conditional name="genome_file_opts">
             <param name="genome_file_opts_selector" type="select" label="Genome file" help="@HELP@">
-                <option value="loc" selected="true">Locally installed Genome file</option>
+                <!-- <option value="loc" selected="true">Locally installed Genome file</option> -->
                 <option value="hist">Genome file from your history</option>
             </param>
-            <when value="loc">
+            <!-- <when value="loc">
                 <param name="genome" type="select" optional="@OPTIONAL@" multiple="false" label="Genome file">
                     <options from_data_table="__dbkeys__" />
                 </param>
-            </when>
+            </when> -->
             <when value="hist">
                 <param name="genome" type="data" optional="@OPTIONAL@" format="tabular" label="Genome file" />
             </when>
         </conditional>
-    </xml> -->
+    </xml>
     <token name="@GENOME_FILE@">
 #if $genome_file_opts.genome
     -g