Mercurial > repos > jackcurragh > ribogalaxy_bowtie_genome

changeset 13:e8551e16829c draft

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Uploaded
author jackcurragh
date Sat, 20 Aug 2022 11:38:29 +0000
parents 167400b3d51f
children a1565147cdc8
files bowtie_genome_wrapper/bowtie_genomic_wrapper.xml
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/bowtie_genome_wrapper/bowtie_genomic_wrapper.xml	Fri May 27 12:33:50 2022 +0000
+++ b/bowtie_genome_wrapper/bowtie_genomic_wrapper.xml	Sat Aug 20 11:38:29 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="bowtie_genomic_wrapper" name="Bowtie Genome Alignment" version="1.5.0">
+<tool id="bowtie_genomic_wrapper" name="Bowtie Genome Alignment" version="1.6.0">
   <description>Align to the Genome with Bowtie</description>
   <requirements>
     <requirement type="package" version="1.2.0">bowtie</requirement>
@@ -222,7 +222,7 @@
         <option value="paired">Paired-end</option>
       </param>
       <when value="single">
-        <param name="sInput1" type="data" format="fastqsanger,fastqillumina,fastqsolexa" label="FASTQ file" help="Must have ASCII encoded quality scores"/>
+        <param name="sInput1" type="data" format="fastq,fastqsanger,fastqillumina,fastqsolexa" label="FASTQ file" help="Must have ASCII encoded quality scores"/>
         <conditional name="sParams">
           <param name="sSettingsType" type="select" label="Bowtie settings to use" help="For most mapping needs use Commonly used settings. If you want full control use Full parameter list">
             <option value="preSet">Commonly used</option>
@@ -313,8 +313,8 @@
         </conditional> <!-- sParams -->
       </when> <!-- single -->
       <when value="paired">
-        <param name="pInput1" type="data" format="fastqsanger,fastqillumina,fastqsolexa" label="Forward FASTQ file" help="Must have ASCII encoded quality scores"/>
-        <param name="pInput2" type="data" format="fastqsanger,fastqillumina,fastqsolexa" label="Reverse FASTQ file" help="File format must match the Forward FASTQ file">
+        <param name="pInput1" type="data" format="fastq,fastqsanger,fastqillumina,fastqsolexa" label="Forward FASTQ file" help="Must have ASCII encoded quality scores"/>
+        <param name="pInput2" type="data" format="fastq,fastqsanger,fastqillumina,fastqsolexa" label="Reverse FASTQ file" help="File format must match the Forward FASTQ file">
             <options options_filter_attribute="ext" from_parameter="tool.app.datatypes_registry.datatypes_by_extension" transform_lines="obj.keys()">
                <column name="name" index="0"/>
                <column name="value" index="0"/>