Mercurial > repos > jackcurragh > ribogalaxy_bowtie_transcriptome

changeset 21:494b4d7145a9 draft

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Uploaded
author triasteran
date Fri, 10 Feb 2023 19:45:05 +0000
parents d93f47e97f98
children 79f5bbf221fd
files bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample
diffstat 2 files changed, 12 insertions(+), 2 deletions(-) [+]
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--- a/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml	Fri Feb 10 10:07:34 2023 +0000
+++ b/bowtie_transcriptome_wrapper/bowtie_transcriptomic_wrapper.xml	Fri Feb 10 19:45:05 2023 +0000
@@ -1,4 +1,4 @@
-<tool id="bowtie_trans_wrapper" name="Bowtie Transcriptome Alignment" version="1.7.6">
+<tool id="bowtie_trans_wrapper" name="Bowtie Transcriptome Alignment" version="1.8a">
   <description>Align to Transcriptome using Bowtie</description>
   <requirements>
     <requirement type="package" version="1.2.0">bowtie</requirement>
--- a/bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample	Fri Feb 10 10:07:34 2023 +0000
+++ b/bowtie_transcriptome_wrapper/tool-data/bowtie_transcriptome_indexes.loc.sample	Fri Feb 10 19:45:05 2023 +0000
@@ -7,6 +7,16 @@
 drosophila_melanogaster_dm3	dm3	Drosophila melanogaster (dm3) Transcriptome	/mnt/data/indices/bowtie/transcriptome/drosophila_melanogater_dm3/drosophila_melanogater_dm3_transcriptome
 drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6) Transcriptome	/mnt/data/indices/bowtie/transcriptome/drosophila_melanogater_dm6/drosophila_melanogater_dm6_transcriptome
 sacCer_9	sacCer9	Saccharomyces cerevisiae (v9) Transcriptome	/mnt/data/indices/bowtie/transcriptome/sacCer_9/sacCer_9_transcriptome
-sarCer_3	sacCer3	Saccharomyces cerevisiae (v3) Transcriptome	/mnt/data/indices/bowtie/transcriptome/sacCer_3/sacCer_3_transcriptome
+sarCer_3	sacCer3	Saccharomyces cerevisiae (sgd sacCer3 R64-1-1) Transcriptome	/mnt/data/indices/bowtie/transcriptome/sacCer_3_sgd_R64/sacCer3_25_07_17
 E_coli_K12_MG1655	e_coli	Escherichia coli (K12 MG1655) Transcriptome	/mnt/data/indices/bowtie/transcriptome/E_coli_K12_MG1655/E_coli_K12_MG1655_transcriptome
+E_coli_K12_ASM584v2	e_coli_ASM584v2	Escherichia coli (K12 ASM584v2) Transcriptome	/mnt/data/indices/bowtie/transcriptome/E_coli_trips/e_coli_trips
 Arabidopsis	araThal	Arabidopsis thaliana (TAIR10) Transcriptome	/mnt/data/indices/bowtie/transcriptome/Arabidopsis/Arabidopsis_transcriptome
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