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1 <tool id="generate-custom_track" name="Generate Custom Track" version="0.1">
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2 <description>Generates a Custom Track File for GWIPS-viz.</description>
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3 <command>
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1
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4 python $__tool_directory__/construct_custom_track.py $input1 $input2 "$input3" "$input4"
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5 </command>
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6
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7 <inputs>
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8 <param name="input1" type="select" label="File Type">
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9 <option value="bigWig" selected="True">bigWig</option>
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10 <option value="bigBed">bigBed</option>
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11 </param>
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12 <param name="input2" type="text" label="URL of File (copy link from history)" />
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13 <param name="input3" type="text" label="Name of this sample" />
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14 <param name="input4" type="text" label="Description of this sample" />
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15 <param name="input5" type="text" label="chromosome position" help="Get this from Gwips.ucc.ie. Hg38 example = chr9:136,848,259-136,851,600"/>
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16 </inputs>
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17 <outputs>
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18 <data name="output1" format="text"/>
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19 </outputs>
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20 <tests>
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21 <test>
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22 <param name="input1" value="test.fasta" ftype="fasta" />
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23 <param name="input2" value="chr"/>
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24 <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" />
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25 </test>
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26 </tests>
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27 <help>
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28 **What it does**
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29
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30 Generates a custom track file for GWIPS-viz.
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31
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32 This is facilitates easy exploration of data processed on RiboGalaxy at a Genome wide scale.
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33 </help>
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34 <citations/>
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35 </tool> |
