Mercurial > repos > jackcurragh > ribogalaxy_genomecov_bedtools

changeset 3:48e1c3a73761 draft

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Uploaded
author jackcurragh
date Fri, 27 May 2022 11:35:46 +0000
parents 3aa9416cc3b3
children d0638e3b9667
files bedtools_genomecov/macros.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/bedtools_genomecov/macros.xml	Fri May 27 11:33:45 2022 +0000
+++ b/bedtools_genomecov/macros.xml	Fri May 27 11:35:46 2022 +0000
@@ -67,7 +67,7 @@
             label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage."
             help="If set, the coverage will be calculated based the spliced intervals only. For BAM files, this inspects the CIGAR N operation to infer the blocks for computing coverage. For BED12 files, this inspects the BlockCount, BlockStarts, and BlockEnds fields (i.e., columns 10,11,12). If this option is not set, coverage will be calculated based on the interval's START/END coordinates, and would include introns in the case of RNAseq data." />
     </xml>
-    <xml name="input_conditional_genome_file" token_optional="false" token_help="">
+    <!-- <xml name="input_conditional_genome_file" token_optional="false" token_help="">
         <conditional name="genome_file_opts">
             <param name="genome_file_opts_selector" type="select" label="Genome file" help="@HELP@">
                 <option value="loc" selected="true">Locally installed Genome file</option>
@@ -82,7 +82,7 @@
                 <param name="genome" type="data" optional="@OPTIONAL@" format="tabular" label="Genome file" />
             </when>
         </conditional>
-    </xml>
+    </xml> -->
     <token name="@GENOME_FILE@">
 #if $genome_file_opts.genome
     -g