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1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="1.0">
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2 <description>order of storing aligned sequences</description>
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3 <command><![CDATA[
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4 cut -f1,2 '${input1}' > '${output1}'
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5 ]]></command>
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6 <inputs>
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7 <param name="input1" type="data" format="fai" label="FASTA FAI File" />
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8 </inputs>
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9 <outputs>
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10 <data name="output1" format="tabular"/>
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11 </outputs>
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12 <tests>
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13 <test>
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14 <param name="input1" value="test.fasta.fai" ftype="fai" />
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15 <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" />
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16 </test>
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17 </tests>
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18 <help>
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19 **What it does**
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20
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21 creates a chromosome sizes file from a fai index
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22 </help>
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23 <citations/>
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24 </tool>
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