Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

comparison get_chrom_sizes/get_chrom_sizes.xml @ 0:6d5d1b56c286 draft

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author jackcurragh
date Wed, 23 Mar 2022 12:53:08 +0000
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children 27f3669eda60
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1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="1.0">
2 <description>order of storing aligned sequences</description>
3 <command><![CDATA[
4 cut -f1,2 '${input1}' > '${output1}'
5 ]]></command>
6 <inputs>
7 <param name="input1" type="data" format="fai" label="FASTA FAI File" />
8 </inputs>
9 <outputs>
10 <data name="output1" format="tabular"/>
11 </outputs>
12 <tests>
13 <test>
14 <param name="input1" value="test.fasta.fai" ftype="fai" />
15 <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" />
16 </test>
17 </tests>
18 <help>
19 **What it does**
20
21 creates a chromosome sizes file from a fai index
22 </help>
23 <citations/>
24 </tool>