Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
comparison get_chrom_sizes/get_chrom_sizes.xml @ 0:6d5d1b56c286 draft
Uploaded
author | jackcurragh |
---|---|
date | Wed, 23 Mar 2022 12:53:08 +0000 |
parents | |
children | 27f3669eda60 |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:6d5d1b56c286 |
---|---|
1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="1.0"> | |
2 <description>order of storing aligned sequences</description> | |
3 <command><![CDATA[ | |
4 cut -f1,2 '${input1}' > '${output1}' | |
5 ]]></command> | |
6 <inputs> | |
7 <param name="input1" type="data" format="fai" label="FASTA FAI File" /> | |
8 </inputs> | |
9 <outputs> | |
10 <data name="output1" format="tabular"/> | |
11 </outputs> | |
12 <tests> | |
13 <test> | |
14 <param name="input1" value="test.fasta.fai" ftype="fai" /> | |
15 <output name="output1" file="test.fasta.sizes" ftype="tabular" lines_diff="4" /> | |
16 </test> | |
17 </tests> | |
18 <help> | |
19 **What it does** | |
20 | |
21 creates a chromosome sizes file from a fai index | |
22 </help> | |
23 <citations/> | |
24 </tool> |