Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
comparison get_chrom_sizes/calculating_chrom.sizes.py @ 4:c6a297d05c8e draft
Uploaded
author | jackcurragh |
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date | Fri, 13 May 2022 09:17:14 +0000 |
parents | cfdf764b9226 |
children | c96b29e00427 |
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3:cfdf764b9226 | 4:c6a297d05c8e |
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24 | 24 |
25 if record not in records: | 25 if record not in records: |
26 records.append(record) | 26 records.append(record) |
27 | 27 |
28 for seq_record in records: | 28 for seq_record in records: |
29 output_line = f"{prefix}{seq_record[0]}\t{seq_record[1]}\n" | 29 if prefix != 'none': |
30 output_line = f"{prefix}{seq_record[0]}\t{seq_record[1]}\n" | |
31 else: | |
32 output_line = f"{seq_record[0]}\t{seq_record[1]}\n" | |
33 | |
30 chromSizesoutput.write(output_line) | 34 chromSizesoutput.write(output_line) |
31 | 35 |
32 chromSizesoutput.close() | 36 chromSizesoutput.close() |