Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

comparison get_chrom_sizes/get_chrom_sizes.xml @ 17:f87a4b64e6ef draft

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author jackcurragh
date Tue, 17 May 2022 13:57:39 +0000
parents c7e2879bf357
children 147706e55621
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16:ab7b5928faea 17:f87a4b64e6ef
1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2"> 1 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2">
2 <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description> 2 <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description>
3 <command> 3 <command>
4 python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} ${output1} 4 python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} "${output1}"
5 #if $refGenomeSource.genomeSource == "builtin": 5 #if $refGenomeSource.genomeSource == "builtin":
6 ${refGenomeSource.input1_builtin.fields.path} 6 ${refGenomeSource.input1_builtin.fields.path}
7 #else: 7 #else:
8 ${refGenomeSource.input1_file} 8 ${refGenomeSource.input1_file}
9 #end if 9 #end if