Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

diff get_chrom_sizes/get_chrom_sizes.xml @ 17:f87a4b64e6ef draft

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author jackcurragh
date Tue, 17 May 2022 13:57:39 +0000
parents c7e2879bf357
children 147706e55621
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line diff
--- a/get_chrom_sizes/get_chrom_sizes.xml	Tue May 17 13:52:08 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Tue May 17 13:57:39 2022 +0000
@@ -1,7 +1,7 @@
 <tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.2">
     <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description>
     <command>
-        python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} ${output1}
+        python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} ${input2} "${output1}"
             #if $refGenomeSource.genomeSource == "builtin":
                 ${refGenomeSource.input1_builtin.fields.path} 
             #else: