Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

changeset 31:75df50cfe7a9 draft

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Uploaded
author jackcurragh
date Fri, 23 Sep 2022 13:59:55 +0000
parents c1f79fd2cecd
children cb5a2a3ed8e7
files get_chrom_sizes/get_chrom_sizes.xml
diffstat 1 files changed, 0 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/get_chrom_sizes/get_chrom_sizes.xml	Fri Sep 23 13:58:14 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Fri Sep 23 13:59:55 2022 +0000
@@ -22,12 +22,6 @@
             end if
         #end if
 
-
-
-                        cat ${refGenomeSource.input1_builtin.fields.path} | awk '$0 ~ ">" {if (NR > 1) {print c;} c=0; printf ${input2} substr($0,2,100) "\t"; } $0 !~ ">" {c+=length($0);} END {print c; }' | cat > $output1
-        #else:
-            cat ${refGenomeSource.input1_file} | awk '$0 ~ ">" {if (NR > 1) {print c;} c=0; printf ${input2} substr($0,2,100) "\t"; } $0 !~ ">" {c+=length($0);} END {print c; }' | cat > $output1
-        #end if
     </command>
     <inputs>
         <conditional name="refGenomeSource">