Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes
changeset 40:9b2bb994fc76 draft
Uploaded
| author | jackcurragh |
|---|---|
| date | Fri, 10 Feb 2023 12:20:56 +0000 |
| parents | 16abcccd3905 |
| children | b117f4993539 |
| files | get_chrom_sizes/calculating_chrom.sizes.py get_chrom_sizes/get_chrom_sizes.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/get_chrom_sizes/calculating_chrom.sizes.py Fri Sep 23 14:47:40 2022 +0000 +++ b/get_chrom_sizes/calculating_chrom.sizes.py Fri Feb 10 12:20:56 2023 +0000 @@ -21,7 +21,7 @@ if line[0] == '>': if record: records.append(record) - record = [line.strip("\n").split(' ')[0][1:], 0] + record = [line.strip("\n").split(' ')[0].split(" ")[0][1:], 0] else: sequence = line.strip('\n')
--- a/get_chrom_sizes/get_chrom_sizes.xml Fri Sep 23 14:47:40 2022 +0000 +++ b/get_chrom_sizes/get_chrom_sizes.xml Fri Feb 10 12:20:56 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.8"> +<tool id="get_chrom_sizes" name="Get Chromosome Sizes" version="2.8.1"> <description>Generates a TAB Delimited chrom.sizes File from an Inputted FASTA</description> <command>