Mercurial > repos > jackcurragh > ribogalaxy_get_chrom_sizes

changeset 13:ed82f3be8656 draft

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Uploaded
author jackcurragh
date Tue, 17 May 2022 13:43:26 +0000
parents 8ff0d6a84b02
children afd11143fb67
files get_chrom_sizes/get_chrom_sizes.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/get_chrom_sizes/get_chrom_sizes.xml	Tue May 17 13:36:39 2022 +0000
+++ b/get_chrom_sizes/get_chrom_sizes.xml	Tue May 17 13:43:26 2022 +0000
@@ -2,10 +2,10 @@
     <description>Chromosome sizes are needed for the creation of ribosome profiles. This tool generates a tab delimited chrom.sizes file from an inputted fasta</description>
     <command>
         python $__tool_directory__/calculating_chrom.sizes.py ${refGenomeSource.genomeSource} 
-            #if $refGenomeSource.genomeSource == "history":
+            #if $refGenomeSource.genomeSource == "builtin":
+                ${refGenomeSource.genomeSource.input1_builtin.fields.path} 
+            #else:
                 ${refGenomeSource.genomeSource.input1_file}
-            #else:
-                ${refGenomeSource.genomeSource.input1_builtin.fields.path} 
             #end if
             ${input2} ${output1}
     </command>