Mercurial > repos > jackcurragh > trips_viz_bam_to_sqlite

changeset 14:0793d26bbae4 draft

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Uploaded
author jackcurragh
date Thu, 03 Nov 2022 12:33:26 +0000
parents df4bb52b226d
children b8e7e562312e
files trips_bam_to_sqlite_builtin/tool-data/builtin_sqlites.loc.sample
diffstat 1 files changed, 8 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/trips_bam_to_sqlite_builtin/tool-data/builtin_sqlites.loc.sample	Thu Nov 03 12:25:58 2022 +0000
+++ b/trips_bam_to_sqlite_builtin/tool-data/builtin_sqlites.loc.sample	Thu Nov 03 12:33:26 2022 +0000
@@ -1,1 +1,8 @@
-phiX_ID phiX174 User-friendly phiX174 Description /path/to/phiX
\ No newline at end of file
+mus_musculus_m28	m28	Mus musculus (m28) Genome	/mnt/data/indices/bowtie/genome/mus_musculus_m28/mus_musculus_m28.fa
+drosophila_melanogaster_dm6	dm6	Drosophila melanogaster (dm6) Genome	/mnt/data/indices/bowtie/genome/drosophila_melanogater_dm6/dm6.fa
+sacCer_9	sacCer9	Saccharomyces cerevisiae (v9) Genome	/mnt/data/indices/bowtie/genome/sacCer_9/S288C_reference_sequence_R9-1-1_19990210.fsa
+sarCer_3	sacCer3	Saccharomyces cerevisiae (v3) Genome	/mnt/data/indices/bowtie/genome/sacCer_3/S288C_reference_sequence_R3-1-1_19970730.fsa
+E_coli_K12_MG1655	e_coli	Escherichia coli (K12 MG1655) Genome	/mnt/data/indices/bowtie/genome/E_coli_K12_MG1655/GCF_003368535.1_ASM336853v1_genomic.fna
+Arabidopsis	araThal	Arabidopsis thaliana (TAIR10) Genome	/mnt/data/indices/bowtie/genome/Arabidopsis/GCF_000001735.4_TAIR10.1_genomic.fna
+homo_sapiens_hg19	hg19	Homo sapiens (hg19) Genome	/mnt/data/indices/bowtie/genome/homo_sapiens_hg19/hg19.fa
+homo_sapiens_hg38	hg38	Homo sapiens (hg38) Genome	/mnt/data/indices/bowtie/genome/homo_sapiens_hg38/hg38.fa