Mercurial > repos > jackcurragh > trips_viz_bam_to_sqlite

changeset 5:8b059b0a19dc draft

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Uploaded
author jackcurragh
date Fri, 27 May 2022 10:14:00 +0000
parents 4ee95ba271a5
children 1be4bbe849e3
files trips_bam_to_sqlite/test-data/test.bam trips_bam_to_sqlite/test-data/test.bamv2.sqlite trips_bam_to_sqlite/test-data/test_n_sorted.bam trips_bam_to_sqlite/test-data/test_n_sorted.bam_n_sorted.bam trips_bam_to_sqlite/test-data/test_n_sorted.bamv2.sqlite trips_bam_to_sqlite/test-data/test_org.sqlite trips_bam_to_sqlite/test-data/test_organism.sqlite trips_bam_to_sqlite/test-data/test_sorted.bam trips_bam_to_sqlite/test-data/test_sorted.bamv2.sqlite trips_bam_to_sqlite/trips_bam_to_sqlite.xml
diffstat 9 files changed, 4 insertions(+), 3 deletions(-) [+]
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Binary file trips_bam_to_sqlite/test-data/test.bam has changed
Binary file trips_bam_to_sqlite/test-data/test.bamv2.sqlite has changed
Binary file trips_bam_to_sqlite/test-data/test_n_sorted.bam has changed
Binary file trips_bam_to_sqlite/test-data/test_n_sorted.bam_n_sorted.bam has changed
Binary file trips_bam_to_sqlite/test-data/test_n_sorted.bamv2.sqlite has changed
Binary file trips_bam_to_sqlite/test-data/test_org.sqlite has changed
Binary file trips_bam_to_sqlite/test-data/test_sorted.bam has changed
Binary file trips_bam_to_sqlite/test-data/test_sorted.bamv2.sqlite has changed
--- a/trips_bam_to_sqlite/trips_bam_to_sqlite.xml	Mon Apr 25 12:40:36 2022 +0000
+++ b/trips_bam_to_sqlite/trips_bam_to_sqlite.xml	Fri May 27 10:14:00 2022 +0000
@@ -1,10 +1,11 @@
-<tool id="bam_to_sqlite" name="BAM to Sqlite (TRIPS-Viz)" version="1.0a">
-    <description>Convert BAM file to SQLITE for TRIPS-Viz</description>
+<tool id="bam_to_sqlite" name="BAM to Sqlite" version="1.1">
+    <description>Convert BAM file to SQLITE for Trips-Viz</description>
     <requirements>
         <requirement type="package" version="0.19.0">pysam</requirement>
         <requirement type="package" version="1.7.0">sqlitedict</requirement>
         <requirement type="package" version="3.37.1">sqlite</requirement>
-        <requirement type="package" version="1.15">samtools</requirement>
+        <requirement type="package" version="1.13">samtools</requirement>
+
     </requirements>
     <command><![CDATA[
         python $__tool_directory__/bam_to_sqlite.py $input1 $input2 $input3 $output1