Mercurial > repos > jankanis > blast2html

annotate blast2html.html.jinja @ 96:02b795b784e1

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fix bug; add comments
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 30 Jun 2014 17:31:10 +0200
parents 4378d11f0ed7
children e17aae23cc1c
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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73
67b1a319c6dc First go at 2.6 compatibility
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1 {# -*- coding: utf-8 -*- #}
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2 <!DOCTYPE html>
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3 <html>
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4 <head>
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5 <meta charset="UTF-8">
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6 <meta name=generator content="blast2html; see https://github.com/thehyve/blast2html/">
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7
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8 <title>Blast output</title>
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9
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10 <style>
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11 body {
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12 color: #333333;
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13 font-family: Arial,Sans-Serif;
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14 }
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16 :link {
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17 color: #336699;
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18 }
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19
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20 .right {
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21 float: right;
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22 }
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eee23a36c582 add a warning if galaxy strips the html header/stylesheet
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24 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/
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25 #strip_html_warning {
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26 display: none;
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27 }
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28
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29 #content {
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30 margin: 0 2em;
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31 padding: 0.5em;
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32 border: 1px solid #888888;
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33 background-color: #d3dff5;
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34 }
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35
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36 h1, h2, h3, h4, h5, h6 {
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37 color: #2A6979;
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38 font-family: arial,verdana,sans-serif;
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39 letter-spacing: -1px;
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40 margin: 1.2em 0 0.3em;
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41 }
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42
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43 h1 {
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44 border-bottom: 1px solid #CCCCCC;
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45 font-size: 150%;
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46 padding-bottom: 0.1em;
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47 }
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48
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49 h2 {
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50 font-size: 120%;
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51 font-weight: bold;
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52 }
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53
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54 h4.darkHeader {
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55 color: #4D4D4D;
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56 letter-spacing: 0;
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57 font-weight: bold;
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58 }
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60 #nodata {
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61 font-weight: bold;
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62 }
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63
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64 .index {
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65 margin-bottom: 3em;
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66 }
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67 .index div.indexentry {
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68 margin: 1.2em 1.6em;
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69 font-weight: bold;
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70 font-size: 100%;
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71 }
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73 .headerdata {
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74 font-size: 90%;
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75 }
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76 .headerdata .param {
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77 font-weight: bold;
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78 text-align: right;
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79 padding: 0 1em;
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80 }
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81
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82 .grey {
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83 background-color: #eeeeee;
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84 border: 1px solid #cccccc;
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85 padding: 1em;
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86 }
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87
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88 .white {
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89 background-color: white;
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90 border: 1px solid #cccccc;
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91 padding: 1.5em 2%;
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92 }
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93
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94 .graphicrow {
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95 clear: left;
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96 width: 100%;
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97 }
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98
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99 .graphicitem {
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100 float: left;
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101 }
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102
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103
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104
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105 .graphics .grey {
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106 text-align: center;
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107 }
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108
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109 .graphic {
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110 background-color: white;
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111 border: 2px solid black;
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112 padding: 1.5em;
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113 margin: auto;
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114 }
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115
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116 .centered, .defline, div.legend, div.tablewrapper {
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117 margin-left: auto;
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118 margin-right: auto;
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119 }
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120
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121 .defline {
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122 background-color: white;
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123 border: 1px solid black;
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124 margin: .5em auto;
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125 padding-left: .2em;
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126 padding-right: .2em;
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127 max-width: 50em;
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128 text-align: left;
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129 height: 2.8em;
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130 overflow: hidden;
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131 }
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132
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133 div.legend {
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134 max-width: 40em;
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135 }
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136 div.legend div {
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137 width: 100%;
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138 color: white;
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139 font-weight: bold;
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140 border-spacing: 0;
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141 }
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142 div.legend div .graphicitem {
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143 width: 20%;
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144 padding: 0;
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145 margin: 0;
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146 border: none;
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147 }
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148
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149 div.tablewrapper {
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150 width: 50%;
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151 min-width: 60em;
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152 }
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153
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154 /* For small widths we give the graphic 100% */
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155 @media (max-width: 72.5em) {
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156 div.tablewrapper {
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157 width: 100%;
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158 min-width: 0px;
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159 }
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160 }
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161
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162 .scale {
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163 width: 100%;
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164 margin: .5em 0;
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165 font-weight: bold;
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166 }
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167 .scale div {
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168 color: red;
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169 text-align: left;
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170 }
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171 .scale .graphicrow {
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172 margin: .5em 0 .5em 0;
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173 color: white;
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174 }
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175 .scale .graphicitem {
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176 position: relative;
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177 }
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178 .scale .graphicitem div {
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179 margin: 0 1px;
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180 padding: 0 2px;
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181 text-align: right;
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182 background-color: red;
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183 color: white;
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184 }
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185 .scale .graphicitem:first-child div {
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186 margin-left: 0px;
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187 }
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188 .scale .graphicitem:last-child div {
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189 margin-right: 0px;
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190 }
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191 .scale .graphicitem .lastlabel {
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192 position: absolute;
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193 top: 0px;
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194 left: 100%;
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195 background-color: transparent;
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196 color: red;
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197 }
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198
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199 a.matchresult {
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200 display: block;
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201 margin: 0;
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202 padding: 0;
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203 }
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204 div.matchrow {
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205 margin-top: 4px;
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206 }
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207 div.matchrow, div.matchitem {
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208 height: 4px;
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209 }
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210
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211
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212 table.descriptiontable {
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213 font-size: 85%;
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214 border: 1px solid #97b0c8;
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215 border-spacing: 0;
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216 color: #222222;
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217 line-height: 1.3em;
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218 background-color: white;
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219 }
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220 table.descriptiontable col:first-child {
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221 width: 100%;
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222 }
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223 table.descriptiontable tr:hover {
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224 background-color: #D5DEE3;
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225 }
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226 table.descriptiontable th {
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227 color: #14376C;
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228 font-weight: normal;
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229 background-color: #F0F0F0;
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230 background: linear-gradient(#FFFFFF, #F0F0F0);
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231 border-bottom: 1px solid #D4DFE9;
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232 border-right: 1px solid #CFCFCF;
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233 border-left: 0px solid black;
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234 border-top: 0px solid black;
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235 }
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236 table.descriptiontable td {
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237 overflow: hidden;
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238 text-align: center;
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239 padding: .4em .8em;
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240 }
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241 table.descriptiontable td div {
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242 width: 1em;
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243 overflow: visible;
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244 white-space: nowrap;
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245 text-align: left;
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246 }
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247
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248
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249
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250 .alignments .white {
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251 padding: 1.5em 1em;
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252 }
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253
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254 .alignment {
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255 border-top: 1px solid black;
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256 padding-left: 1em;
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257 padding-right: 1em;
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258 }
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259
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260 div.linkheader {
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261 padding-top: .2em;
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262 font-size: 85%;
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263 color: #14376C;
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264 }
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265 div.linkheader a.linkheader {
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266 margin-right: 1em;
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267 }
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268 div.linkheader .right a {
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269 text-decoration: none;
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270 }
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271
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272 .title .hittitle {
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273 color: #222222;
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274 margin-bottom: .3em;
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275 }
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276 .title .titleinfo {
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277 font-size: 80%;
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278 margin-top: 0;
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279 margin-bottom: .3em;
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280 }
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281 .title .titleinfo .b {
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282 color: #606060;
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283 font-weight: bold;
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284 font-size: 90%;
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285 }
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286
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287 .moretitles {
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288 margin: 1.2em;
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289 }
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290 .moretitles .titleinfo {
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291 margin: 0;
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292 padding: 0;
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293 }
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294 .moretitles .hittitle {
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295 margin: .4em 0 .2em 0;
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296 padding: 0;
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297 }
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298
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299 a.showmoretitles {
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300 font-size: 75%;
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301 color: #336699;
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302 font-weight: bold;
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diff changeset
303 margin-top: 0;
11
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diff changeset
304 }
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diff changeset
305 a.showmoretitles:hover {
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diff changeset
306 }
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parents: 10
diff changeset
307
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diff changeset
308 .hotspot {
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diff changeset
309 color: #606060;
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diff changeset
310 font-family: verdana, arial, sans-serif;
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diff changeset
311 margin-bottom: 2.5em;
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diff changeset
312 }
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diff changeset
313
12
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diff changeset
314 .hotspot p.range {
11
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diff changeset
315 font-size: 70%;
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diff changeset
316 margin-top: 0;
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diff changeset
317 margin-top: 1em;
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318 margin-bottom: .2em;
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319 }
12
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320 .hotspot p.range span.range {
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321 font-weight: bold;
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322 }
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diff changeset
323 .hotspot p.range a.range {
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diff changeset
324 margin-left: .5em;
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diff changeset
325 }
11
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parents: 10
diff changeset
326
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diff changeset
327 table.hotspotstable {
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diff changeset
328 border-top: 1px solid;
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diff changeset
329 border-bottom: 1px solid;
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330 text-align: left;
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diff changeset
331 border-collapse: collapse;
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
332 }
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parents: 10
diff changeset
333 table.hotspotstable th, table.hotspotstable td {
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334 padding: .1em 1em;
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Jan Kanis <jan.code@jankanis.nl>
parents: 10
diff changeset
335 }
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
336 table.hotspotstable th {
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337 font-size: 70%;
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parents: 10
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338 }
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diff changeset
339 table.hotspotstable td {
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340 min-width: 7em;
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341 color: #222222;
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diff changeset
342 font-size: 80%;
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Jan Kanis <jan.code@jankanis.nl>
parents: 10
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343 }
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Jan Kanis <jan.code@jankanis.nl>
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344
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diff changeset
345 pre.alignmentgraphic {
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346 color: #222222;
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347 }
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diff changeset
348
23
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349 footer {
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350 text-align: center;
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351 color: #cccccc;
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352 font-size: 70%;
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353 margin-top: 1em;
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354 }
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355 footer :link {
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356 color: #5588cc;
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357 }
11
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parents: 10
diff changeset
358
5
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359 </style>
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360
10
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diff changeset
361 <script type="text/javascript">
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diff changeset
362 function toggle_visibility(id) {
16
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diff changeset
363 var e = document.getElementById(id);
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364 if(e.style.display != 'block')
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365 e.style.display = 'block';
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366 else
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diff changeset
367 e.style.display = 'none';
10
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368 }
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369 </script>
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370
5
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371 </head>
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parents:
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372
11
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diff changeset
373
5
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374 <body>
27
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parents: 26
diff changeset
375
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diff changeset
376 <div id="strip_html_warning">
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
377 <!-- This div should be hidden by the header css block. Galaxy
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parents: 26
diff changeset
378 strips all css, breaking this page but making this warning
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parents: 26
diff changeset
379 visible. This warning contains some ugly old skool tabular html
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diff changeset
380 layout that is not stripped. -->
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parents: 26
diff changeset
381 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
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parents: 26
diff changeset
382 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
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Jan Kanis <jan.code@jankanis.nl>
parents: 26
diff changeset
383 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
4e6ac737ba17 improve the galaxy html stripping warning; make sure the tool can find the template from within galaxy
Jan Kanis <jan.code@jankanis.nl>
parents: 26
diff changeset
384 </b></font></td></tr></table>
26
eee23a36c582 add a warning if galaxy strips the html header/stylesheet
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parents: 24
diff changeset
385 </div>
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Jan Kanis <jan.code@jankanis.nl>
parents: 24
diff changeset
386
5
1df2bfce5c24 first features are working, partial match table
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parents:
diff changeset
387 <div id=content>
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parents:
diff changeset
388
19
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diff changeset
389 {% if not blast.BlastOutput_iterations.findall('Iteration') %}
17
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parents: 16
diff changeset
390 <section class=nodata>
19
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parents: 17
diff changeset
391 <h1>No data</h1>
7
9e7927673089 intermediate commit before converting some tables to divs
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parents: 6
diff changeset
392 <div class=grey>
19
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diff changeset
393 No matches
7
9e7927673089 intermediate commit before converting some tables to divs
Jan Kanis <jan.code@jankanis.nl>
parents: 6
diff changeset
394 </div>
17
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parents: 16
diff changeset
395 </section>
5
1df2bfce5c24 first features are working, partial match table
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
396
19
67ddcb807b7d make it work with multiple queries
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parents: 17
diff changeset
397 {% else %}
20
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
398
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
399 {% if blast.BlastOutput_iterations.findall('Iteration') | length > 1 %}
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parents: 19
diff changeset
400 <section class=index>
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Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
401 <h1>Queries</h1>
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
402
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
403 {% for result in blast.BlastOutput_iterations.Iteration %}
53
4217bb9cf1d3 depend on python 3; fix internal links with multiple iterations
Jan Kanis <jan.code@jankanis.nl>
parents: 33
diff changeset
404 <div class=indexentry><a href="#match{{result|nodeid}}">
20
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
405 {% set hits = result|hits %}
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
406 {{result['Iteration_query-ID']}}: {{result['Iteration_query-def']}}
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Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
407 ({{result|len}} letters, {{hits|length}} hits)
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Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
408 </a></div>
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
409 {% endfor %}
21
9596fea636bb style changes
Jan Kanis <jan.code@jankanis.nl>
parents: 20
diff changeset
410
20
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
411 </section>
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
412 {% endif %}
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
413
19
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
414 {% for result in blast.BlastOutput_iterations.Iteration %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
415
53
4217bb9cf1d3 depend on python 3; fix internal links with multiple iterations
Jan Kanis <jan.code@jankanis.nl>
parents: 33
diff changeset
416 <section class=match id=match{{result|nodeid}}>
10
2fbdf2eb27b4 All data is displayed now, still some formatting to do
Jan Kanis <jan.code@jankanis.nl>
parents: 9
diff changeset
417
19
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
418 <h1>Nucleotide Sequence ({{result|len}} letters)</h1>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
419
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
420 <section class=header>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
421
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
422 <table class=headerdata>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
423 {% for param, value in params %}
23
6995a6f34f3f fix sectioning, add footer
Jan Kanis <jan.code@jankanis.nl>
parents: 22
diff changeset
424 <tr><td class=param>{{param}}:</td><td>{{value}}</td></tr>
19
67ddcb807b7d make it work with multiple queries
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parents: 17
diff changeset
425 {% endfor %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
426 </table>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
427
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
428 </section>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
429
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
430 {% set hits = result|hits %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
431 {% if not hits %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
432 <section>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
433 <h2>No Hits</h2>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
434 <div class=grey>
24
c8347745bbad use Iteration_message tag; also work with unexpected Hit_id values
Jan Kanis <jan.code@jankanis.nl>
parents: 23
diff changeset
435 <table class=headerdata>
c8347745bbad use Iteration_message tag; also work with unexpected Hit_id values
Jan Kanis <jan.code@jankanis.nl>
parents: 23
diff changeset
436 <tr><td class=param>Message:</td><td>{{result.Iteration_message}}</td></tr>
c8347745bbad use Iteration_message tag; also work with unexpected Hit_id values
Jan Kanis <jan.code@jankanis.nl>
parents: 23
diff changeset
437 </table>
19
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
438 </div>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
439 </section>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
440 {% else %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
441
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
442 <section class=graphics>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
443 <h2>Graphic Summary</h2>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
444
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
445 <div class=grey>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
446 <h3 class=centered>Distribution of {{result|length}} Blast Hits on the Query Sequence</h3>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
447
53
4217bb9cf1d3 depend on python 3; fix internal links with multiple iterations
Jan Kanis <jan.code@jankanis.nl>
parents: 33
diff changeset
448 <div class=defline id=defline{{result|nodeid}}>
19
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
449 Mouse-over to show defline and scores, click to show alignments
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450 </div>
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451
19
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452 <div class=graphic>
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453 <h4 class=darkHeader>Color key for alignment scores</h4>
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454 <div class=legend><div class=graphicrow>
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455 <div class=graphicitem style="background-color: {{colors[0]}}">&lt;40</div>
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456 <div class=graphicitem style="background-color: {{colors[1]}}">40–50</div>
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457 <div class=graphicitem style="background-color: {{colors[2]}}">50–80</div>
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458 <div class=graphicitem style="background-color: {{colors[3]}}">80–200</div>
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459 <div class=graphicitem style="background-color: {{colors[4]}}">200≤</div>
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460 </div></div>
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461 <div style="clear: left"></div>
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462
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diff changeset
463 <div class=tablewrapper>
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464
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465 <div class=scale>
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466 <div>query:</div>
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467 <div class=graphicrow>
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468 <div>
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469 {% for s in result|queryscale %}
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470 <div class=graphicitem style="width: {{s.width|numfmt}}%">
20
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471 {% if s.width > 3.0 %}
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472 <div>{{s.label}}</div>
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diff changeset
473 {% else %}
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474 <div>&nbsp;</div>
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475 <div class=lastlabel>{{s.label}}</div>
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476 {% endif %}
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477 </div>
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478 {% endfor %}
19
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479 </div>
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480 </div>
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481 <div style="clear: left"></div>
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482 </div>
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483
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484 {% for line in result|match_colors %}
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485 <a class=matchresult
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486 href="#hit{{line.hit|nodeid}}"
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487 onmouseover='document.getElementById("defline{{result|nodeid}}").innerHTML="{{line.defline|js_string_escape}}"'
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488 onmouseout='document.getElementById("defline{{result|nodeid}}").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
19
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489 title="{{line.defline}}">
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490 <div class="matchrow graphicrow">
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491 {% for hit in line.colors %}
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492 <div class="matchitem graphicitem"
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493 style="background-color: {{hit[1]}}; width: {{hit[0]|numfmt}}%"></div>
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494 {% endfor %}
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495 </div>
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496 </a>
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497
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498 {% endfor %}
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499 </div>
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500 </div>
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501 </div>
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diff changeset
502 </section>
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503
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504
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diff changeset
505
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diff changeset
506 <section class=descriptions>
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507 <h2>Descriptions</h2>
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508
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diff changeset
509 <div class=grey><div class=white>
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510 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
10
2fbdf2eb27b4 All data is displayed now, still some formatting to do
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diff changeset
511
19
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512 <table class=descriptiontable>
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513 <col/><col/><col/><col/><col/><col/><col/>
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514 <tr>
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515 <th>Description</th>
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516 <th>Max score</th>
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517 <th>Total score</th>
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518 <th>Query cover</th>
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diff changeset
519 <th>E value</th>
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520 <th>Ident</th>
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521 <th>Accession</th>
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522 </tr>
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diff changeset
523 {% for hit in result|hit_info %}
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524 <tr>
53
4217bb9cf1d3 depend on python 3; fix internal links with multiple iterations
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525 <td><div><a href="#hit{{hit.hit|nodeid}}"
19
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526 title="{{hit.title}}"
53
4217bb9cf1d3 depend on python 3; fix internal links with multiple iterations
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527 id="description{{hit.hit|nodeid}}">
19
67ddcb807b7d make it work with multiple queries
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528 {{hit.title}}
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diff changeset
529 </a></div></td>
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diff changeset
530 <td>{{hit.maxscore}}</td>
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diff changeset
531 <td>{{hit.totalscore}}</td>
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diff changeset
532 <td>{{hit.cover}}</td>
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533 <td>{{hit.e_value}}</td>
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diff changeset
534 <td>{{hit.ident}}</td>
95
4378d11f0ed7 implement configurable gene bank links
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diff changeset
535 <td>{{hit.hit|genelink(hit.hit.Hit_accession)}}</td>
19
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diff changeset
536 </tr>
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537 {% endfor %}
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diff changeset
538 </table>
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diff changeset
539
67ddcb807b7d make it work with multiple queries
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diff changeset
540 </div></div>
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diff changeset
541 </section>
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parents: 17
diff changeset
542
67ddcb807b7d make it work with multiple queries
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parents: 17
diff changeset
543
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
544
67ddcb807b7d make it work with multiple queries
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diff changeset
545 <section class=alignments>
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parents: 17
diff changeset
546 <h2>Alignments</h2>
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parents: 17
diff changeset
547
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
548 <div class=grey><div class=white>
67ddcb807b7d make it work with multiple queries
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diff changeset
549 {% for hit in hits %}
53
4217bb9cf1d3 depend on python 3; fix internal links with multiple iterations
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diff changeset
550 <div class=alignment id=hit{{hit|nodeid}}>
19
67ddcb807b7d make it work with multiple queries
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parents: 17
diff changeset
551
67ddcb807b7d make it work with multiple queries
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diff changeset
552 <div class=linkheader>
53
4217bb9cf1d3 depend on python 3; fix internal links with multiple iterations
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diff changeset
553 <div class=right><a href="#description{{hit|nodeid}}">Descriptions</a></div>
95
4378d11f0ed7 implement configurable gene bank links
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diff changeset
554 {{ hit|genelink('Gene Bank', clas='linkheader', display_nolink=False) }}
19
67ddcb807b7d make it work with multiple queries
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parents: 17
diff changeset
555 </div>
5
1df2bfce5c24 first features are working, partial match table
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parents:
diff changeset
556
19
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diff changeset
557 <div class=title>
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diff changeset
558 <p class=hittitle>{{hit|firsttitle}}</p>
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diff changeset
559 <p class=titleinfo>
95
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diff changeset
560 <span class=b>Sequence ID:</span> {{ hit|genelink }}
19
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diff changeset
561 <span class=b>Length:</span> {{hit.Hit_len}}
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diff changeset
562 <span class=b>Number of Matches:</span> {{hit.Hit_hsps.Hsp|length}}
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parents: 17
diff changeset
563 </p>
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parents: 17
diff changeset
564 </div>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
565
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diff changeset
566 {% if hit|othertitles|length %}
53
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
567 <a class=showmoretitles onclick="toggle_visibility('moretitles{{hit|nodeid|js_string_escape}}'); return false;" href=''>
19
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diff changeset
568 See {{hit|othertitles|length}} more title(s)
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parents: 17
diff changeset
569 </a>
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parents: 17
diff changeset
570
53
4217bb9cf1d3 depend on python 3; fix internal links with multiple iterations
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diff changeset
571 <div class=moretitles id=moretitles{{hit|nodeid}} style="display: none">
19
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diff changeset
572 {% for title in hit|othertitles %}
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diff changeset
573 <div class=title>
96
02b795b784e1 fix bug; add comments
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diff changeset
574 <p class=hittitle>{{title.Hit_def}}</p>
19
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diff changeset
575 <p class=titleinfo>
95
4378d11f0ed7 implement configurable gene bank links
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diff changeset
576 <span class=b>Sequence ID:</span> {{ title|genelink }}
19
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parents: 17
diff changeset
577 </p>
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parents: 17
diff changeset
578 </div>
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diff changeset
579 {% endfor %}
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diff changeset
580 </div>
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diff changeset
581 {% endif %}
10
2fbdf2eb27b4 All data is displayed now, still some formatting to do
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parents: 9
diff changeset
582
19
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diff changeset
583 {% for hsp in hit.Hit_hsps.Hsp %}
53
4217bb9cf1d3 depend on python 3; fix internal links with multiple iterations
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diff changeset
584 <div class=hotspot id=hotspot{{hsp|nodeid}}>
19
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parents: 17
diff changeset
585 <p class=range>
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diff changeset
586 <span class=range>Range {{hsp.Hsp_num}}: {{hsp['Hsp_hit-from']}} to {{hsp['Hsp_hit-to']}}</span>
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diff changeset
587 </p>
67ddcb807b7d make it work with multiple queries
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parents: 17
diff changeset
588
67ddcb807b7d make it work with multiple queries
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parents: 17
diff changeset
589 <table class=hotspotstable>
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parents: 17
diff changeset
590 <tr>
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diff changeset
591 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
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parents: 17
diff changeset
592 </tr>
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diff changeset
593 <tr>
67ddcb807b7d make it work with multiple queries
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diff changeset
594 <td>{{hsp['Hsp_bit-score']|fmt('.1f')}} bits({{hsp.Hsp_score}})</td>
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Jan Kanis <jan.code@jankanis.nl>
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595 <td>{{hsp.Hsp_evalue|fmt('.1f')}}</td>
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596 <td>{{ hsp.Hsp_identity }}/{{ hsp|len }}({{
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597 ((hsp.Hsp_identity|float)/hsp|len) | fmt('.0%') }})</td>
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598 <td>{{ hsp.Hsp_gaps }}/{{ hsp|len
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599 }}({{ ((hsp.Hsp_gaps|float) / hsp|len) | fmt('.0%') }})</td>
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600 <td>{{ hsp['Hsp_query-frame']|asframe }}/{{ hsp['Hsp_hit-frame']|asframe }}</td>
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601 </tr>
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602 </table>
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603
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604 {% for alignment_line in hsp|alignment_pre %}
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605 <pre class=alignmentgraphic>{{alignment_line}}</pre>
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606 {% endfor %}
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607 </div>
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608 {% endfor %}
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609
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610 </div>
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611
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612 {% endfor %}
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613 </div></div>
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614 </section>
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615 {% endif %}
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616 </section>
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617 {% endfor %}
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618 {% endif %}
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619
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620 </div>
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621
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622 <footer>
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623 This page was generated by <a href="https://github.com/thehyve/blast2html/">blast2html</a>.
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624 </footer>
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625 </body>
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626 </html>
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627
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628 {#
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629 Local Variables:
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630 tab-width: 2
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631 indent-tabs-mode: nil
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632 End:
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633 #}