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annotate blast2html.xml @ 36:0f015cb32b93

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add argparse dependency for python <2.7
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 15 May 2014 18:22:49 +0200
parents 2b23b4a4d88e
children 36730fda2f54
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1 <tool id="blast2html" name="blast2html" version="0.0.2">
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3 <description>Convert BLAST XML to HTML</description>
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4
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5 <requirements>
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6 <requirement type="python-module">jinja2</requirement>
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7 <requirement type="python-module">lxml</requirement>
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8 <requirement type="python-module">argparse</requirement>
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9 </requirements>
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11 <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command>
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13 <inputs>
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14 <param format="blast" name="input" type="data" label="Source file"/>
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15 </inputs>
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17 <outputs>
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18 <data format="html" name="output" />
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19 </outputs>
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21 <tests>
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22 <test>
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23 <param name="input" value="blast xml example1.xml"/>
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24 <output name="out_file1" file="blast xml example1.html"/>
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25 </test>
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26 <test>
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27 <param name="input" value="blast xml example2.xml"/>
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28 <output name="out_file1" file="blast xml example2.html"/>
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29 </test>
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30 <test>
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31 <param name="input" value="blast xml example3.xml"/>
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32 <output name="out_file1" file="blast xml example3.html"/>
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33 </test>
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34 <test>
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35 <param name="input" value="blast xml example4.xml"/>
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36 <output name="out_file1" file="blast xml example4.html"/>
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37 </test>
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38 </tests>
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40 <help>
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41 This tool converts the default BLAST XML result into a HTML document
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42 </help>
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44 </tool>