Mercurial > repos > jankanis > blast2html
annotate tool_dependencies.xml @ 34:5d7a82f49485
update version
author | Jan Kanis <jan.code@jankanis.nl> |
---|---|
date | Thu, 15 May 2014 18:08:27 +0200 |
parents | ce8f29efc0a1 |
children |
rev | line source |
---|---|
34 | 1 <tool id="blast2html" name="blast2html" version="0.0.2"> |
28
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
2 |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
3 <description>Convert BLAST XML to HTML</description> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
4 |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
5 <requirements> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
6 <requirement type="python-module">jinja2</requirement> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
7 <requirement type="python-module">lxml</requirement> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
8 </requirements> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
9 |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
10 <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
11 |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
12 <inputs> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
13 <param format="blast" name="input" type="data" label="Source file"/> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
14 </inputs> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
15 |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
16 <outputs> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
17 <data format="html" name="output" /> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
18 </outputs> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
19 |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
20 <tests> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
21 <test> |
32 | 22 <param name="input" value="blast xml example1.xml"/> |
23 <output name="out_file1" file="blast xml example1.html"/> | |
28
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
24 </test> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
25 <test> |
32 | 26 <param name="input" value="blast xml example2.xml"/> |
27 <output name="out_file1" file="blast xml example2.html"/> | |
28 </test> | |
29 <test> | |
30 <param name="input" value="blast xml example3.xml"/> | |
31 <output name="out_file1" file="blast xml example3.html"/> | |
32 </test> | |
33 <test> | |
34 <param name="input" value="blast xml example4.xml"/> | |
35 <output name="out_file1" file="blast xml example4.html"/> | |
28
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
36 </test> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
37 </tests> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
38 |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
39 <help> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
40 This tool converts the default BLAST XML result into a HTML document |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
41 </help> |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
42 |
8a8c0c71b5d1
add blast2html.xml config setting
Jan Kanis <jan.code@jankanis.nl>
parents:
diff
changeset
|
43 </tool> |