Mercurial > repos > jankanis > blast2html
annotate test-data/blast xml example4.html @ 33:3bb5da68305e
add test update script, add url to github page
author | Jan Kanis <jan.code@jankanis.nl> |
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date | Thu, 15 May 2014 17:29:44 +0200 |
parents | ce8f29efc0a1 |
children | f611cf649c90 |
rev | line source |
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32 | 1 <!DOCTYPE html> |
2 <html> | |
3 <head> | |
4 <meta charset="UTF-8"> | |
33
3bb5da68305e
add test update script, add url to github page
Jan Kanis <jan.code@jankanis.nl>
parents:
32
diff
changeset
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5 <meta name=generator content="blast2html; see https://github.com/thehyve/blast2html/"> |
32 | 6 |
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371 | |
372 | |
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374 | |
375 <div id="strip_html_warning"> | |
376 <!-- This div should be hidden by the header css block. Galaxy | |
377 strips all css, breaking this page but making this warning | |
378 visible. This warning contains some ugly old skool tabular html | |
379 layout that is not stripped. --> | |
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381 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font> | |
382 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy. | |
383 </b></font></td></tr></table> | |
384 </div> | |
385 | |
386 <div id=content> | |
387 | |
388 | |
389 <section class=index> | |
390 <h1>Queries</h1> | |
391 | |
392 <div class=indexentry><a href="#match1"> | |
393 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) | |
394 (20 letters, 2 hits) | |
395 </a></div> | |
396 <div class=indexentry><a href="#match2"> | |
397 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) | |
398 (20 letters, 0 hits) | |
399 </a></div> | |
400 <div class=indexentry><a href="#match3"> | |
401 Query_3: Probe|NOST-Spec_(Genetic_ID) | |
402 (20 letters, 3 hits) | |
403 </a></div> | |
404 <div class=indexentry><a href="#match4"> | |
405 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R | |
406 (24 letters, 0 hits) | |
407 </a></div> | |
408 <div class=indexentry><a href="#match5"> | |
409 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R | |
410 (20 letters, 0 hits) | |
411 </a></div> | |
412 <div class=indexentry><a href="#match6"> | |
413 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R | |
414 (25 letters, 2 hits) | |
415 </a></div> | |
416 <div class=indexentry><a href="#match7"> | |
417 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R | |
418 (74 letters, 2 hits) | |
419 </a></div> | |
420 | |
421 </section> | |
422 | |
423 | |
424 <section class=match id=match1> | |
425 | |
426 <h1>Nucleotide Sequence (20 letters)</h1> | |
427 | |
428 <section class=header> | |
429 | |
430 <table class=headerdata> | |
431 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> | |
432 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> | |
433 <tr><td class=param>Query length:</td><td>20</td></tr> | |
434 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> | |
435 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr> | |
436 </table> | |
437 | |
438 </section> | |
439 | |
440 | |
441 <section class=graphics> | |
442 <h2>Graphic Summary</h2> | |
443 | |
444 <div class=grey> | |
445 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3> | |
446 | |
447 <div class=defline id=defline1> | |
448 Mouse-over to show defline and scores, click to show alignments | |
449 </div> | |
450 | |
451 <div class=graphic> | |
452 <h4 class=darkHeader>Color key for alignment scores</h4> | |
453 <div class=legend><div class=graphicrow> | |
454 <div class=graphicitem style="background-color: black"><40</div> | |
455 <div class=graphicitem style="background-color: blue">40–50</div> | |
456 <div class=graphicitem style="background-color: green">50–80</div> | |
457 <div class=graphicitem style="background-color: magenta">80–200</div> | |
458 <div class=graphicitem style="background-color: red">200≤</div> | |
459 </div></div> | |
460 <div style="clear: left"></div> | |
461 | |
462 <div class=tablewrapper> | |
463 | |
464 <div class=scale> | |
465 <div>query:</div> | |
466 <div class=graphicrow> | |
467 <div> | |
468 <div class=graphicitem style="width: 10.0%"> | |
469 <div>2</div> | |
470 </div> | |
471 <div class=graphicitem style="width: 10.0%"> | |
472 <div>4</div> | |
473 </div> | |
474 <div class=graphicitem style="width: 10.0%"> | |
475 <div>6</div> | |
476 </div> | |
477 <div class=graphicitem style="width: 10.0%"> | |
478 <div>8</div> | |
479 </div> | |
480 <div class=graphicitem style="width: 10.0%"> | |
481 <div>10</div> | |
482 </div> | |
483 <div class=graphicitem style="width: 10.0%"> | |
484 <div>12</div> | |
485 </div> | |
486 <div class=graphicitem style="width: 10.0%"> | |
487 <div>14</div> | |
488 </div> | |
489 <div class=graphicitem style="width: 10.0%"> | |
490 <div>16</div> | |
491 </div> | |
492 <div class=graphicitem style="width: 10.0%"> | |
493 <div>18</div> | |
494 </div> | |
495 <div class=graphicitem style="width: 10.0%"> | |
496 <div>20</div> | |
497 </div> | |
498 </div> | |
499 </div> | |
500 <div style="clear: left"></div> | |
501 </div> | |
502 | |
503 <a class=matchresult | |
504 href="#hit1" | |
505 onmouseover='document.getElementById("defline1").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"' | |
506 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
507 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"> | |
508 <div class="matchrow graphicrow"> | |
509 <div class="matchitem graphicitem" | |
510 style="background-color: black; width: 100.0%"></div> | |
511 </div> | |
512 </a> | |
513 | |
514 <a class=matchresult | |
515 href="#hit2" | |
516 onmouseover='document.getElementById("defline1").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"' | |
517 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
518 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"> | |
519 <div class="matchrow graphicrow"> | |
520 <div class="matchitem graphicitem" | |
521 style="background-color: black; width: 100.0%"></div> | |
522 </div> | |
523 </a> | |
524 | |
525 </div> | |
526 </div> | |
527 </div> | |
528 </section> | |
529 | |
530 | |
531 | |
532 <section class=descriptions> | |
533 <h2>Descriptions</h2> | |
534 | |
535 <div class=grey><div class=white> | |
536 <h4 class=darkHeader>Sequences producing significant alignments:</h4> | |
537 | |
538 <table class=descriptiontable> | |
539 <col/><col/><col/><col/><col/><col/><col/> | |
540 <tr> | |
541 <th>Description</th> | |
542 <th>Max score</th> | |
543 <th>Total score</th> | |
544 <th>Query cover</th> | |
545 <th>E value</th> | |
546 <th>Ident</th> | |
547 <th>Accession</th> | |
548 </tr> | |
549 <tr> | |
550 <td><div><a href="#hit1" | |
551 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000" | |
552 id="description1"> | |
553 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000 | |
554 </a></div></td> | |
555 <td>40.1</td> | |
556 <td>40.1</td> | |
557 <td>100%</td> | |
558 <td>1.513e-07</td> | |
559 <td>100%</td> | |
560 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">5</a></td> | |
561 </tr> | |
562 <tr> | |
563 <td><div><a href="#hit2" | |
564 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000" | |
565 id="description2"> | |
566 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000 | |
567 </a></div></td> | |
568 <td>40.1</td> | |
569 <td>40.1</td> | |
570 <td>100%</td> | |
571 <td>1.513e-07</td> | |
572 <td>100%</td> | |
573 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">2</a></td> | |
574 </tr> | |
575 </table> | |
576 | |
577 </div></div> | |
578 </section> | |
579 | |
580 | |
581 | |
582 <section class=alignments> | |
583 <h2>Alignments</h2> | |
584 | |
585 <div class=grey><div class=white> | |
586 <div class=alignment id=hit1> | |
587 | |
588 <div class=linkheader> | |
589 <div class=right><a href="#description1">Descriptions</a></div> | |
590 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a> | |
591 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a> | |
592 </div> | |
593 | |
594 <div class=title> | |
595 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> | |
596 <p class=titleinfo> | |
597 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">5</a> | |
598 <span class=b>Length:</span> 2457 | |
599 <span class=b>Number of Matches:</span> 1 | |
600 </p> | |
601 </div> | |
602 | |
603 | |
604 <div class=hotspot> | |
605 <p class=range> | |
606 <span class=range>Range 1: 2119 to 2138</span> | |
607 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2119&to=2138">GenBank</a> | |
608 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2119&to=2138">Graphics</a> | |
609 </p> | |
610 | |
611 <table class=hotspotstable> | |
612 <tr> | |
613 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
614 </tr> | |
615 <tr> | |
616 <td>40.1 bits(20)</td> | |
617 <td>0.0</td> | |
618 <td>20/20(100%)</td> | |
619 <td>0/20(0%)</td> | |
620 <td>Plus/Plus</td> | |
621 </tr> | |
622 </table> | |
623 | |
624 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20 | |
625 |||||||||||||||||||| | |
626 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre> | |
627 </div> | |
628 | |
629 </div> | |
630 | |
631 <div class=alignment id=hit2> | |
632 | |
633 <div class=linkheader> | |
634 <div class=right><a href="#description2">Descriptions</a></div> | |
635 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a> | |
636 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a> | |
637 </div> | |
638 | |
639 <div class=title> | |
640 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> | |
641 <p class=titleinfo> | |
642 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">2</a> | |
643 <span class=b>Length:</span> 323 | |
644 <span class=b>Number of Matches:</span> 1 | |
645 </p> | |
646 </div> | |
647 | |
648 | |
649 <div class=hotspot> | |
650 <p class=range> | |
651 <span class=range>Range 1: 200 to 219</span> | |
652 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=200&to=219">GenBank</a> | |
653 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=200&to=219">Graphics</a> | |
654 </p> | |
655 | |
656 <table class=hotspotstable> | |
657 <tr> | |
658 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
659 </tr> | |
660 <tr> | |
661 <td>40.1 bits(20)</td> | |
662 <td>0.0</td> | |
663 <td>20/20(100%)</td> | |
664 <td>0/20(0%)</td> | |
665 <td>Plus/Plus</td> | |
666 </tr> | |
667 </table> | |
668 | |
669 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20 | |
670 |||||||||||||||||||| | |
671 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre> | |
672 </div> | |
673 | |
674 </div> | |
675 | |
676 </div></div> | |
677 </section> | |
678 </section> | |
679 | |
680 <section class=match id=match2> | |
681 | |
682 <h1>Nucleotide Sequence (20 letters)</h1> | |
683 | |
684 <section class=header> | |
685 | |
686 <table class=headerdata> | |
687 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> | |
688 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> | |
689 <tr><td class=param>Query length:</td><td>20</td></tr> | |
690 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> | |
691 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr> | |
692 </table> | |
693 | |
694 </section> | |
695 | |
696 <section> | |
697 <h2>No Hits</h2> | |
698 <div class=grey> | |
699 <table class=headerdata> | |
700 <tr><td class=param>Message:</td><td>No hits found</td></tr> | |
701 </table> | |
702 </div> | |
703 </section> | |
704 </section> | |
705 | |
706 <section class=match id=match3> | |
707 | |
708 <h1>Nucleotide Sequence (20 letters)</h1> | |
709 | |
710 <section class=header> | |
711 | |
712 <table class=headerdata> | |
713 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> | |
714 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> | |
715 <tr><td class=param>Query length:</td><td>20</td></tr> | |
716 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> | |
717 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr> | |
718 </table> | |
719 | |
720 </section> | |
721 | |
722 | |
723 <section class=graphics> | |
724 <h2>Graphic Summary</h2> | |
725 | |
726 <div class=grey> | |
727 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3> | |
728 | |
729 <div class=defline id=defline3> | |
730 Mouse-over to show defline and scores, click to show alignments | |
731 </div> | |
732 | |
733 <div class=graphic> | |
734 <h4 class=darkHeader>Color key for alignment scores</h4> | |
735 <div class=legend><div class=graphicrow> | |
736 <div class=graphicitem style="background-color: black"><40</div> | |
737 <div class=graphicitem style="background-color: blue">40–50</div> | |
738 <div class=graphicitem style="background-color: green">50–80</div> | |
739 <div class=graphicitem style="background-color: magenta">80–200</div> | |
740 <div class=graphicitem style="background-color: red">200≤</div> | |
741 </div></div> | |
742 <div style="clear: left"></div> | |
743 | |
744 <div class=tablewrapper> | |
745 | |
746 <div class=scale> | |
747 <div>query:</div> | |
748 <div class=graphicrow> | |
749 <div> | |
750 <div class=graphicitem style="width: 10.0%"> | |
751 <div>2</div> | |
752 </div> | |
753 <div class=graphicitem style="width: 10.0%"> | |
754 <div>4</div> | |
755 </div> | |
756 <div class=graphicitem style="width: 10.0%"> | |
757 <div>6</div> | |
758 </div> | |
759 <div class=graphicitem style="width: 10.0%"> | |
760 <div>8</div> | |
761 </div> | |
762 <div class=graphicitem style="width: 10.0%"> | |
763 <div>10</div> | |
764 </div> | |
765 <div class=graphicitem style="width: 10.0%"> | |
766 <div>12</div> | |
767 </div> | |
768 <div class=graphicitem style="width: 10.0%"> | |
769 <div>14</div> | |
770 </div> | |
771 <div class=graphicitem style="width: 10.0%"> | |
772 <div>16</div> | |
773 </div> | |
774 <div class=graphicitem style="width: 10.0%"> | |
775 <div>18</div> | |
776 </div> | |
777 <div class=graphicitem style="width: 10.0%"> | |
778 <div>20</div> | |
779 </div> | |
780 </div> | |
781 </div> | |
782 <div style="clear: left"></div> | |
783 </div> | |
784 | |
785 <a class=matchresult | |
786 href="#hit1" | |
787 onmouseover='document.getElementById("defline3").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"' | |
788 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
789 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"> | |
790 <div class="matchrow graphicrow"> | |
791 <div class="matchitem graphicitem" | |
792 style="background-color: black; width: 100.0%"></div> | |
793 </div> | |
794 </a> | |
795 | |
796 <a class=matchresult | |
797 href="#hit2" | |
798 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"' | |
799 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
800 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"> | |
801 <div class="matchrow graphicrow"> | |
802 <div class="matchitem graphicitem" | |
803 style="background-color: black; width: 100.0%"></div> | |
804 </div> | |
805 </a> | |
806 | |
807 <a class=matchresult | |
808 href="#hit3" | |
809 onmouseover='document.getElementById("defline3").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"' | |
810 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
811 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000"> | |
812 <div class="matchrow graphicrow"> | |
813 <div class="matchitem graphicitem" | |
814 style="background-color: transparent; width: 15.0%"></div> | |
815 <div class="matchitem graphicitem" | |
816 style="background-color: black; width: 85.0%"></div> | |
817 </div> | |
818 </a> | |
819 | |
820 </div> | |
821 </div> | |
822 </div> | |
823 </section> | |
824 | |
825 | |
826 | |
827 <section class=descriptions> | |
828 <h2>Descriptions</h2> | |
829 | |
830 <div class=grey><div class=white> | |
831 <h4 class=darkHeader>Sequences producing significant alignments:</h4> | |
832 | |
833 <table class=descriptiontable> | |
834 <col/><col/><col/><col/><col/><col/><col/> | |
835 <tr> | |
836 <th>Description</th> | |
837 <th>Max score</th> | |
838 <th>Total score</th> | |
839 <th>Query cover</th> | |
840 <th>E value</th> | |
841 <th>Ident</th> | |
842 <th>Accession</th> | |
843 </tr> | |
844 <tr> | |
845 <td><div><a href="#hit1" | |
846 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000" | |
847 id="description1"> | |
848 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000 | |
849 </a></div></td> | |
850 <td>40.1</td> | |
851 <td>40.1</td> | |
852 <td>100%</td> | |
853 <td>1.513e-07</td> | |
854 <td>100%</td> | |
855 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">5</a></td> | |
856 </tr> | |
857 <tr> | |
858 <td><div><a href="#hit2" | |
859 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000" | |
860 id="description2"> | |
861 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000 | |
862 </a></div></td> | |
863 <td>40.1</td> | |
864 <td>40.1</td> | |
865 <td>100%</td> | |
866 <td>1.513e-07</td> | |
867 <td>100%</td> | |
868 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">2</a></td> | |
869 </tr> | |
870 <tr> | |
871 <td><div><a href="#hit3" | |
872 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000" | |
873 id="description3"> | |
874 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000 | |
875 </a></div></td> | |
876 <td>34.2</td> | |
877 <td>34.2</td> | |
878 <td>85%</td> | |
879 <td>9.334e-06</td> | |
880 <td>100%</td> | |
881 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">1</a></td> | |
882 </tr> | |
883 </table> | |
884 | |
885 </div></div> | |
886 </section> | |
887 | |
888 | |
889 | |
890 <section class=alignments> | |
891 <h2>Alignments</h2> | |
892 | |
893 <div class=grey><div class=white> | |
894 <div class=alignment id=hit1> | |
895 | |
896 <div class=linkheader> | |
897 <div class=right><a href="#description1">Descriptions</a></div> | |
898 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a> | |
899 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a> | |
900 </div> | |
901 | |
902 <div class=title> | |
903 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> | |
904 <p class=titleinfo> | |
905 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">5</a> | |
906 <span class=b>Length:</span> 2457 | |
907 <span class=b>Number of Matches:</span> 1 | |
908 </p> | |
909 </div> | |
910 | |
911 | |
912 <div class=hotspot> | |
913 <p class=range> | |
914 <span class=range>Range 1: 2143 to 2162</span> | |
915 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2143&to=2162">GenBank</a> | |
916 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2143&to=2162">Graphics</a> | |
917 </p> | |
918 | |
919 <table class=hotspotstable> | |
920 <tr> | |
921 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
922 </tr> | |
923 <tr> | |
924 <td>40.1 bits(20)</td> | |
925 <td>0.0</td> | |
926 <td>20/20(100%)</td> | |
927 <td>0/20(0%)</td> | |
928 <td>Plus/Plus</td> | |
929 </tr> | |
930 </table> | |
931 | |
932 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20 | |
933 |||||||||||||||||||| | |
934 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre> | |
935 </div> | |
936 | |
937 </div> | |
938 | |
939 <div class=alignment id=hit2> | |
940 | |
941 <div class=linkheader> | |
942 <div class=right><a href="#description2">Descriptions</a></div> | |
943 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a> | |
944 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a> | |
945 </div> | |
946 | |
947 <div class=title> | |
948 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> | |
949 <p class=titleinfo> | |
950 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">2</a> | |
951 <span class=b>Length:</span> 323 | |
952 <span class=b>Number of Matches:</span> 1 | |
953 </p> | |
954 </div> | |
955 | |
956 | |
957 <div class=hotspot> | |
958 <p class=range> | |
959 <span class=range>Range 1: 224 to 243</span> | |
960 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=224&to=243">GenBank</a> | |
961 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=224&to=243">Graphics</a> | |
962 </p> | |
963 | |
964 <table class=hotspotstable> | |
965 <tr> | |
966 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
967 </tr> | |
968 <tr> | |
969 <td>40.1 bits(20)</td> | |
970 <td>0.0</td> | |
971 <td>20/20(100%)</td> | |
972 <td>0/20(0%)</td> | |
973 <td>Plus/Plus</td> | |
974 </tr> | |
975 </table> | |
976 | |
977 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20 | |
978 |||||||||||||||||||| | |
979 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre> | |
980 </div> | |
981 | |
982 </div> | |
983 | |
984 <div class=alignment id=hit3> | |
985 | |
986 <div class=linkheader> | |
987 <div class=right><a href="#description3">Descriptions</a></div> | |
988 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a> | |
989 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a> | |
990 </div> | |
991 | |
992 <div class=title> | |
993 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p> | |
994 <p class=titleinfo> | |
995 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">1</a> | |
996 <span class=b>Length:</span> 1045 | |
997 <span class=b>Number of Matches:</span> 1 | |
998 </p> | |
999 </div> | |
1000 | |
1001 | |
1002 <div class=hotspot> | |
1003 <p class=range> | |
1004 <span class=range>Range 1: 2 to 18</span> | |
1005 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2&to=18">GenBank</a> | |
1006 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2&to=18">Graphics</a> | |
1007 </p> | |
1008 | |
1009 <table class=hotspotstable> | |
1010 <tr> | |
1011 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
1012 </tr> | |
1013 <tr> | |
1014 <td>34.2 bits(17)</td> | |
1015 <td>0.0</td> | |
1016 <td>17/17(100%)</td> | |
1017 <td>0/17(0%)</td> | |
1018 <td>Plus/Plus</td> | |
1019 </tr> | |
1020 </table> | |
1021 | |
1022 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20 | |
1023 ||||||||||||||||| | |
1024 Subject 2 GCGCGGTGTCATCTATG 18</pre> | |
1025 </div> | |
1026 | |
1027 </div> | |
1028 | |
1029 </div></div> | |
1030 </section> | |
1031 </section> | |
1032 | |
1033 <section class=match id=match4> | |
1034 | |
1035 <h1>Nucleotide Sequence (24 letters)</h1> | |
1036 | |
1037 <section class=header> | |
1038 | |
1039 <table class=headerdata> | |
1040 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> | |
1041 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> | |
1042 <tr><td class=param>Query length:</td><td>20</td></tr> | |
1043 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> | |
1044 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr> | |
1045 </table> | |
1046 | |
1047 </section> | |
1048 | |
1049 <section> | |
1050 <h2>No Hits</h2> | |
1051 <div class=grey> | |
1052 <table class=headerdata> | |
1053 <tr><td class=param>Message:</td><td>No hits found</td></tr> | |
1054 </table> | |
1055 </div> | |
1056 </section> | |
1057 </section> | |
1058 | |
1059 <section class=match id=match5> | |
1060 | |
1061 <h1>Nucleotide Sequence (20 letters)</h1> | |
1062 | |
1063 <section class=header> | |
1064 | |
1065 <table class=headerdata> | |
1066 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> | |
1067 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> | |
1068 <tr><td class=param>Query length:</td><td>20</td></tr> | |
1069 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> | |
1070 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr> | |
1071 </table> | |
1072 | |
1073 </section> | |
1074 | |
1075 <section> | |
1076 <h2>No Hits</h2> | |
1077 <div class=grey> | |
1078 <table class=headerdata> | |
1079 <tr><td class=param>Message:</td><td>No hits found</td></tr> | |
1080 </table> | |
1081 </div> | |
1082 </section> | |
1083 </section> | |
1084 | |
1085 <section class=match id=match6> | |
1086 | |
1087 <h1>Nucleotide Sequence (25 letters)</h1> | |
1088 | |
1089 <section class=header> | |
1090 | |
1091 <table class=headerdata> | |
1092 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> | |
1093 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> | |
1094 <tr><td class=param>Query length:</td><td>20</td></tr> | |
1095 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> | |
1096 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr> | |
1097 </table> | |
1098 | |
1099 </section> | |
1100 | |
1101 | |
1102 <section class=graphics> | |
1103 <h2>Graphic Summary</h2> | |
1104 | |
1105 <div class=grey> | |
1106 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3> | |
1107 | |
1108 <div class=defline id=defline6> | |
1109 Mouse-over to show defline and scores, click to show alignments | |
1110 </div> | |
1111 | |
1112 <div class=graphic> | |
1113 <h4 class=darkHeader>Color key for alignment scores</h4> | |
1114 <div class=legend><div class=graphicrow> | |
1115 <div class=graphicitem style="background-color: black"><40</div> | |
1116 <div class=graphicitem style="background-color: blue">40–50</div> | |
1117 <div class=graphicitem style="background-color: green">50–80</div> | |
1118 <div class=graphicitem style="background-color: magenta">80–200</div> | |
1119 <div class=graphicitem style="background-color: red">200≤</div> | |
1120 </div></div> | |
1121 <div style="clear: left"></div> | |
1122 | |
1123 <div class=tablewrapper> | |
1124 | |
1125 <div class=scale> | |
1126 <div>query:</div> | |
1127 <div class=graphicrow> | |
1128 <div> | |
1129 <div class=graphicitem style="width: 12.0%"> | |
1130 <div>3</div> | |
1131 </div> | |
1132 <div class=graphicitem style="width: 12.0%"> | |
1133 <div>6</div> | |
1134 </div> | |
1135 <div class=graphicitem style="width: 12.0%"> | |
1136 <div>9</div> | |
1137 </div> | |
1138 <div class=graphicitem style="width: 12.0%"> | |
1139 <div>12</div> | |
1140 </div> | |
1141 <div class=graphicitem style="width: 12.0%"> | |
1142 <div>15</div> | |
1143 </div> | |
1144 <div class=graphicitem style="width: 12.0%"> | |
1145 <div>18</div> | |
1146 </div> | |
1147 <div class=graphicitem style="width: 12.0%"> | |
1148 <div>21</div> | |
1149 </div> | |
1150 <div class=graphicitem style="width: 12.0%"> | |
1151 <div>24</div> | |
1152 </div> | |
1153 <div class=graphicitem style="width: 4.0%"> | |
1154 <div>25</div> | |
1155 </div> | |
1156 </div> | |
1157 </div> | |
1158 <div style="clear: left"></div> | |
1159 </div> | |
1160 | |
1161 <a class=matchresult | |
1162 href="#hit1" | |
1163 onmouseover='document.getElementById("defline6").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"' | |
1164 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
1165 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"> | |
1166 <div class="matchrow graphicrow"> | |
1167 <div class="matchitem graphicitem" | |
1168 style="background-color: black; width: 88.0%"></div> | |
1169 <div class="matchitem graphicitem" | |
1170 style="background-color: transparent; width: 12.0%"></div> | |
1171 </div> | |
1172 </a> | |
1173 | |
1174 <a class=matchresult | |
1175 href="#hit2" | |
1176 onmouseover='document.getElementById("defline6").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"' | |
1177 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
1178 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"> | |
1179 <div class="matchrow graphicrow"> | |
1180 <div class="matchitem graphicitem" | |
1181 style="background-color: black; width: 88.0%"></div> | |
1182 <div class="matchitem graphicitem" | |
1183 style="background-color: transparent; width: 12.0%"></div> | |
1184 </div> | |
1185 </a> | |
1186 | |
1187 </div> | |
1188 </div> | |
1189 </div> | |
1190 </section> | |
1191 | |
1192 | |
1193 | |
1194 <section class=descriptions> | |
1195 <h2>Descriptions</h2> | |
1196 | |
1197 <div class=grey><div class=white> | |
1198 <h4 class=darkHeader>Sequences producing significant alignments:</h4> | |
1199 | |
1200 <table class=descriptiontable> | |
1201 <col/><col/><col/><col/><col/><col/><col/> | |
1202 <tr> | |
1203 <th>Description</th> | |
1204 <th>Max score</th> | |
1205 <th>Total score</th> | |
1206 <th>Query cover</th> | |
1207 <th>E value</th> | |
1208 <th>Ident</th> | |
1209 <th>Accession</th> | |
1210 </tr> | |
1211 <tr> | |
1212 <td><div><a href="#hit1" | |
1213 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000" | |
1214 id="description1"> | |
1215 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000 | |
1216 </a></div></td> | |
1217 <td>36.2</td> | |
1218 <td>36.2</td> | |
1219 <td>88%</td> | |
1220 <td>3.148e-06</td> | |
1221 <td>95%</td> | |
1222 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">7</a></td> | |
1223 </tr> | |
1224 <tr> | |
1225 <td><div><a href="#hit2" | |
1226 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000" | |
1227 id="description2"> | |
1228 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000 | |
1229 </a></div></td> | |
1230 <td>36.2</td> | |
1231 <td>36.2</td> | |
1232 <td>88%</td> | |
1233 <td>3.148e-06</td> | |
1234 <td>95%</td> | |
1235 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">6</a></td> | |
1236 </tr> | |
1237 </table> | |
1238 | |
1239 </div></div> | |
1240 </section> | |
1241 | |
1242 | |
1243 | |
1244 <section class=alignments> | |
1245 <h2>Alignments</h2> | |
1246 | |
1247 <div class=grey><div class=white> | |
1248 <div class=alignment id=hit1> | |
1249 | |
1250 <div class=linkheader> | |
1251 <div class=right><a href="#description1">Descriptions</a></div> | |
1252 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a> | |
1253 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a> | |
1254 </div> | |
1255 | |
1256 <div class=title> | |
1257 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> | |
1258 <p class=titleinfo> | |
1259 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">7</a> | |
1260 <span class=b>Length:</span> 4983 | |
1261 <span class=b>Number of Matches:</span> 1 | |
1262 </p> | |
1263 </div> | |
1264 | |
1265 | |
1266 <div class=hotspot> | |
1267 <p class=range> | |
1268 <span class=range>Range 1: 2344 to 2365</span> | |
1269 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2344&to=2365">GenBank</a> | |
1270 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2344&to=2365">Graphics</a> | |
1271 </p> | |
1272 | |
1273 <table class=hotspotstable> | |
1274 <tr> | |
1275 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
1276 </tr> | |
1277 <tr> | |
1278 <td>36.2 bits(18)</td> | |
1279 <td>0.0</td> | |
1280 <td>21/22(95%)</td> | |
1281 <td>0/22(0%)</td> | |
1282 <td>Plus/Plus</td> | |
1283 </tr> | |
1284 </table> | |
1285 | |
1286 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22 | |
1287 |||||||||||||| ||||||| | |
1288 Subject 2344 ACATGAACAGCGCCCTGACCAC 2365</pre> | |
1289 </div> | |
1290 | |
1291 </div> | |
1292 | |
1293 <div class=alignment id=hit2> | |
1294 | |
1295 <div class=linkheader> | |
1296 <div class=right><a href="#description2">Descriptions</a></div> | |
1297 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a> | |
1298 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a> | |
1299 </div> | |
1300 | |
1301 <div class=title> | |
1302 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> | |
1303 <p class=titleinfo> | |
1304 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">6</a> | |
1305 <span class=b>Length:</span> 4180 | |
1306 <span class=b>Number of Matches:</span> 1 | |
1307 </p> | |
1308 </div> | |
1309 | |
1310 | |
1311 <div class=hotspot> | |
1312 <p class=range> | |
1313 <span class=range>Range 1: 1541 to 1562</span> | |
1314 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=1541&to=1562">GenBank</a> | |
1315 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=1541&to=1562">Graphics</a> | |
1316 </p> | |
1317 | |
1318 <table class=hotspotstable> | |
1319 <tr> | |
1320 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
1321 </tr> | |
1322 <tr> | |
1323 <td>36.2 bits(18)</td> | |
1324 <td>0.0</td> | |
1325 <td>21/22(95%)</td> | |
1326 <td>0/22(0%)</td> | |
1327 <td>Plus/Plus</td> | |
1328 </tr> | |
1329 </table> | |
1330 | |
1331 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22 | |
1332 |||||||||||||| ||||||| | |
1333 Subject 1541 ACATGAACAGCGCCCTGACCAC 1562</pre> | |
1334 </div> | |
1335 | |
1336 </div> | |
1337 | |
1338 </div></div> | |
1339 </section> | |
1340 </section> | |
1341 | |
1342 <section class=match id=match7> | |
1343 | |
1344 <h1>Nucleotide Sequence (74 letters)</h1> | |
1345 | |
1346 <section class=header> | |
1347 | |
1348 <table class=headerdata> | |
1349 <tr><td class=param>Query ID:</td><td>Query_1</td></tr> | |
1350 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> | |
1351 <tr><td class=param>Query length:</td><td>20</td></tr> | |
1352 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> | |
1353 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr> | |
1354 </table> | |
1355 | |
1356 </section> | |
1357 | |
1358 | |
1359 <section class=graphics> | |
1360 <h2>Graphic Summary</h2> | |
1361 | |
1362 <div class=grey> | |
1363 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3> | |
1364 | |
1365 <div class=defline id=defline7> | |
1366 Mouse-over to show defline and scores, click to show alignments | |
1367 </div> | |
1368 | |
1369 <div class=graphic> | |
1370 <h4 class=darkHeader>Color key for alignment scores</h4> | |
1371 <div class=legend><div class=graphicrow> | |
1372 <div class=graphicitem style="background-color: black"><40</div> | |
1373 <div class=graphicitem style="background-color: blue">40–50</div> | |
1374 <div class=graphicitem style="background-color: green">50–80</div> | |
1375 <div class=graphicitem style="background-color: magenta">80–200</div> | |
1376 <div class=graphicitem style="background-color: red">200≤</div> | |
1377 </div></div> | |
1378 <div style="clear: left"></div> | |
1379 | |
1380 <div class=tablewrapper> | |
1381 | |
1382 <div class=scale> | |
1383 <div>query:</div> | |
1384 <div class=graphicrow> | |
1385 <div> | |
1386 <div class=graphicitem style="width: 10.81081081081081%"> | |
1387 <div>8</div> | |
1388 </div> | |
1389 <div class=graphicitem style="width: 10.81081081081081%"> | |
1390 <div>16</div> | |
1391 </div> | |
1392 <div class=graphicitem style="width: 10.81081081081081%"> | |
1393 <div>24</div> | |
1394 </div> | |
1395 <div class=graphicitem style="width: 10.81081081081081%"> | |
1396 <div>32</div> | |
1397 </div> | |
1398 <div class=graphicitem style="width: 10.81081081081081%"> | |
1399 <div>40</div> | |
1400 </div> | |
1401 <div class=graphicitem style="width: 10.81081081081081%"> | |
1402 <div>48</div> | |
1403 </div> | |
1404 <div class=graphicitem style="width: 10.81081081081081%"> | |
1405 <div>56</div> | |
1406 </div> | |
1407 <div class=graphicitem style="width: 10.81081081081081%"> | |
1408 <div>64</div> | |
1409 </div> | |
1410 <div class=graphicitem style="width: 10.81081081081081%"> | |
1411 <div>72</div> | |
1412 </div> | |
1413 <div class=graphicitem style="width: 2.7027027027027026%"> | |
1414 <div> </div> | |
1415 <div class=lastlabel>74</div> | |
1416 </div> | |
1417 </div> | |
1418 </div> | |
1419 <div style="clear: left"></div> | |
1420 </div> | |
1421 | |
1422 <a class=matchresult | |
1423 href="#hit1" | |
1424 onmouseover='document.getElementById("defline7").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"' | |
1425 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
1426 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"> | |
1427 <div class="matchrow graphicrow"> | |
1428 <div class="matchitem graphicitem" | |
1429 style="background-color: green; width: 100.0%"></div> | |
1430 </div> | |
1431 </a> | |
1432 | |
1433 <a class=matchresult | |
1434 href="#hit2" | |
1435 onmouseover='document.getElementById("defline7").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"' | |
1436 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"' | |
1437 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"> | |
1438 <div class="matchrow graphicrow"> | |
1439 <div class="matchitem graphicitem" | |
1440 style="background-color: green; width: 100.0%"></div> | |
1441 </div> | |
1442 </a> | |
1443 | |
1444 </div> | |
1445 </div> | |
1446 </div> | |
1447 </section> | |
1448 | |
1449 | |
1450 | |
1451 <section class=descriptions> | |
1452 <h2>Descriptions</h2> | |
1453 | |
1454 <div class=grey><div class=white> | |
1455 <h4 class=darkHeader>Sequences producing significant alignments:</h4> | |
1456 | |
1457 <table class=descriptiontable> | |
1458 <col/><col/><col/><col/><col/><col/><col/> | |
1459 <tr> | |
1460 <th>Description</th> | |
1461 <th>Max score</th> | |
1462 <th>Total score</th> | |
1463 <th>Query cover</th> | |
1464 <th>E value</th> | |
1465 <th>Ident</th> | |
1466 <th>Accession</th> | |
1467 </tr> | |
1468 <tr> | |
1469 <td><div><a href="#hit1" | |
1470 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000" | |
1471 id="description1"> | |
1472 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000 | |
1473 </a></div></td> | |
1474 <td>67.9</td> | |
1475 <td>67.9</td> | |
1476 <td>100%</td> | |
1477 <td>3.564e-15</td> | |
1478 <td>86%</td> | |
1479 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">7</a></td> | |
1480 </tr> | |
1481 <tr> | |
1482 <td><div><a href="#hit2" | |
1483 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000" | |
1484 id="description2"> | |
1485 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000 | |
1486 </a></div></td> | |
1487 <td>67.9</td> | |
1488 <td>67.9</td> | |
1489 <td>100%</td> | |
1490 <td>3.564e-15</td> | |
1491 <td>86%</td> | |
1492 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">6</a></td> | |
1493 </tr> | |
1494 </table> | |
1495 | |
1496 </div></div> | |
1497 </section> | |
1498 | |
1499 | |
1500 | |
1501 <section class=alignments> | |
1502 <h2>Alignments</h2> | |
1503 | |
1504 <div class=grey><div class=white> | |
1505 <div class=alignment id=hit1> | |
1506 | |
1507 <div class=linkheader> | |
1508 <div class=right><a href="#description1">Descriptions</a></div> | |
1509 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a> | |
1510 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a> | |
1511 </div> | |
1512 | |
1513 <div class=title> | |
1514 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> | |
1515 <p class=titleinfo> | |
1516 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">7</a> | |
1517 <span class=b>Length:</span> 4983 | |
1518 <span class=b>Number of Matches:</span> 1 | |
1519 </p> | |
1520 </div> | |
1521 | |
1522 | |
1523 <div class=hotspot> | |
1524 <p class=range> | |
1525 <span class=range>Range 1: 2319 to 2392</span> | |
1526 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2319&to=2392">GenBank</a> | |
1527 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2319&to=2392">Graphics</a> | |
1528 </p> | |
1529 | |
1530 <table class=hotspotstable> | |
1531 <tr> | |
1532 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
1533 </tr> | |
1534 <tr> | |
1535 <td>67.9 bits(34)</td> | |
1536 <td>0.0</td> | |
1537 <td>64/74(86%)</td> | |
1538 <td>0/74(0%)</td> | |
1539 <td>Plus/Plus</td> | |
1540 </tr> | |
1541 </table> | |
1542 | |
1543 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74 | |
1544 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| |||||||| | |
1545 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 2392</pre> | |
1546 </div> | |
1547 | |
1548 </div> | |
1549 | |
1550 <div class=alignment id=hit2> | |
1551 | |
1552 <div class=linkheader> | |
1553 <div class=right><a href="#description2">Descriptions</a></div> | |
1554 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a> | |
1555 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a> | |
1556 </div> | |
1557 | |
1558 <div class=title> | |
1559 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> | |
1560 <p class=titleinfo> | |
1561 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">6</a> | |
1562 <span class=b>Length:</span> 4180 | |
1563 <span class=b>Number of Matches:</span> 1 | |
1564 </p> | |
1565 </div> | |
1566 | |
1567 | |
1568 <div class=hotspot> | |
1569 <p class=range> | |
1570 <span class=range>Range 1: 1516 to 1589</span> | |
1571 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=1516&to=1589">GenBank</a> | |
1572 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=1516&to=1589">Graphics</a> | |
1573 </p> | |
1574 | |
1575 <table class=hotspotstable> | |
1576 <tr> | |
1577 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> | |
1578 </tr> | |
1579 <tr> | |
1580 <td>67.9 bits(34)</td> | |
1581 <td>0.0</td> | |
1582 <td>64/74(86%)</td> | |
1583 <td>0/74(0%)</td> | |
1584 <td>Plus/Plus</td> | |
1585 </tr> | |
1586 </table> | |
1587 | |
1588 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74 | |
1589 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| |||||||| | |
1590 Subject 1516 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 1589</pre> | |
1591 </div> | |
1592 | |
1593 </div> | |
1594 | |
1595 </div></div> | |
1596 </section> | |
1597 </section> | |
1598 | |
1599 </div> | |
1600 | |
1601 <footer> | |
33
3bb5da68305e
add test update script, add url to github page
Jan Kanis <jan.code@jankanis.nl>
parents:
32
diff
changeset
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1602 This page was generated by <a href="https://github.com/thehyve/blast2html/">blast2html</a>. |
32 | 1603 </footer> |
1604 </body> | |
1605 </html> | |
1606 |