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annotate tool_dependencies.xml @ 53:4217bb9cf1d3

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depend on python 3; fix internal links with multiple iterations
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 26 May 2014 13:07:13 +0200
parents b15a20c2372a
children 6d96d48a10f8
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="cython" version="0.20.1">
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4 <repository name="package_cython_0_20_1" owner="iuc" prior_installation_required="True"
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5 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="c3a8c46fcb97" />
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6 </package>
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7
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8 <package name="libxml2" version="2.9.1">
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9 <repository name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True"
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10 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb" />
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11 </package>
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12
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13 <package name="libxslt" version="1.1.28">
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14 <repository name="package_libxslt_1_1_28" owner="devteam" prior_installation_required="True"
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15 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee" />
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16 </package>
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17
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18 <package name="python3" version="3.4.1">
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19 <repository name="package_python3_4" owner="jankanis" prior_installation_required="True"
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20 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="9dbfc4fcef0a" />
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21 </package>
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23 <package name="blast2html_venv" version="0.1">
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24 <install version="1.0">
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25 <actions>
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26 <action type="set_environment_for_install">
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27 <repository name="package_cython_0_20_1" owner="iuc"
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28 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="c3a8c46fcb97">
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29 <package name="cython" version="0.20.1" />
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30 </repository>
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31 <repository name="package_libxml2_2_9_1" owner="devteam"
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32 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb">
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33 <package name="libxml2" version="2.9.1" />
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34 </repository>
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35 <repository name="package_libxslt_1_1_28" owner="devteam"
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36 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee">
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37 <package name="libxslt" version="1.1.28" />
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38 </repository>
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39 <repository name="python3" owner="jankanis">
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40 <package name="python3" version="3.4.1" />
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41 </repository>
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42 </action>
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44 <action type="shell_command">
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45 # Unset any saved environment settings from parent virtual
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46 # environments, e.g. for python 2 or if Galaxy itself is running
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47 # from within a virtual environment.
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48 unset _OLD_VIRTUAL_PATH; unset _OLD_VIRTUAL_PYTHONHOME
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49 pyvenv blast2html_venv
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50 . blast2html_venv/bin/activate
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51 pip3 install lxml jinja2
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52 </action>
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54 <action type="set_environment">
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55 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python3.4/site-packages</environment_variable>
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56 </action>
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57 </actions>
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58 </install>
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59 <readme>A Python 3 virtual environment that includes the python packages blast2html depends on, which are lxml and jinja2.</readme>
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60 </package>
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62 </tool_dependency>