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annotate blast2html.xml @ 51:b15a20c2372a

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fix python 2 compatibility
author Jan Kanis <jan.code@jankanis.nl>
date Wed, 21 May 2014 18:34:35 +0200
parents 7d3f399d0d98
children d6c7b5de2833
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1 <tool id="blast2html" name="blast2html" version="0.0.7">
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3 <description>Convert BLAST XML to HTML</description>
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4
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5 <requirements>
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6 <requirement type="package" version="v0.0.18">blast_datatypes</requirement>
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7 <requirement name="package" version="1.3.0">six</requirement>
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8 <requirement name="package" version="1.2.1">argparse</requirement>
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9 <requirement name="package" version="2.2.3">lxml</requirement>
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10 <requirement name="package" version="2.7.2">jinja2</requirement>
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11 </requirements>
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13 <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command>
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15 <stdio>
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16 <!-- Any exit code other than 0 is an error -->
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17 <exit_code range="1:" />
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18 <exit_code range=":-1" />
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19 </stdio>
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21 <inputs>
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22 <param format="blast" name="input" type="data" label="Source file"/>
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23 </inputs>
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25 <outputs>
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26 <data format="html" name="output" />
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27 </outputs>
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29 <tests>
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30 <test>
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31 <param name="input" value="blast xml example1.xml"/>
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32 <output name="out_file1" file="blast xml example1.html"/>
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33 </test>
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34 <test>
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35 <param name="input" value="blast xml example2.xml"/>
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36 <output name="out_file1" file="blast xml example2.html"/>
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37 </test>
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38 <test>
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39 <param name="input" value="blast xml example3.xml"/>
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40 <output name="out_file1" file="blast xml example3.html"/>
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41 </test>
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42 <test>
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43 <param name="input" value="blast xml example4.xml"/>
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44 <output name="out_file1" file="blast xml example4.html"/>
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45 </test>
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46 </tests>
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47
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48 <help>
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49 This tool converts the default BLAST XML result into a HTML document
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50 </help>
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52 </tool>