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1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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2 <html xmlns="http://www.w3.org/1999/xhtml"><head>
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3
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4 <meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
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5 <meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1">
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6 <meta name="jig" content="ncbitoggler ncbiautocomplete ncbilocalnav ncbigrid ncbipopper">
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7 <meta name="ncbitoggler" content="animation:'none'">
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8 <meta name="ncbipopper" content="animation:'none',closeEvent: 'click',openEvent: 'click',destPosition: 'top right',triggerPosition: 'bottom right'">
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9
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10 <meta name="ncbi_app" content="blast">
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11 <meta name="ncbi_pdid" content="blastresults">
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12 <meta name="ncbi_stat" content="false">
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13 <meta name="ncbi_sessionid" content="8A8E11EE2CABF371_0000SID">
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14 <meta name="ncbi_phid" content="5AAB74D7368F2C81000000000000C9C8">
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15 <script type="text/javascript"> var ncbi_startTime = new Date(); </script>
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16 <title>NCBI Blast:Nucleotide Sequence (16 letters)</title>
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17 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jig.js"></script><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/jig.themenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbitogglernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbitogglernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbiautocompletenull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbiautocompletenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbibasicmenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbibasicmenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbimenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbimenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbilocalnavnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbilocalnavnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.buttonnull"></script><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbibuttonnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbibuttonnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbipoppernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbipoppernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbigridnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbigridnull"><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/jig.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_005.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_004.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_004.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_007.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_003.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_007.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_008.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_008.js"></script><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_005.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_009.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_006.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_006.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.css">
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18 <script type="text/javascript"> jQuery.getScript("/core/alerts/alerts.js", function() {
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19 galert(['div#header', 'body > *:nth-child(1)'])
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20 });</script>
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21 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/main.css" media="screen">
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22 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/blastRes.css" media="screen">
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23 <!--[if IE]>
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24 <link rel="stylesheet" type="text/css" href="css/descriptionsIE.css" media="screen" />
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25 <![endif]-->
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26 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/print.css" media="print">
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27 <!--[if lte IE 6]>
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28 <link rel="stylesheet" type="text/css" href="css/ie6_or_less.css" />
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29 <![endif]-->
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30 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/blastReq.css" media="screen">
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31 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/results.css" media="screen">
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32 <link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/dynFormatRes.css" media="screen">
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33
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34 <style media="print" type="text/css">.print-log { position:absolute;left:-10000px;top:auto;width:1px;height:1px;overflow:hidden; }.print-log li { list-style-image: url('/stat?jsevent=print&ncbi_app=blast&ncbi_pdid=blastresults&ncbi_phid=5AAB74D7368F2C81000000000000C9C8'); }</style><style type="text/css">.print-log { position:absolute;left:-10000px;top:auto;width:1px;height:1px;overflow:hidden; }</style><style type="text/css" charset="utf-8">/* See license.txt for terms of usage */
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35 /** reset styling **/
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36 .firebugResetStyles {
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37 z-index: 2147483646 !important;
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38 top: 0 !important;
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39 left: 0 !important;
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40 display: block !important;
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41 border: 0 none !important;
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42 margin: 0 !important;
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43 padding: 0 !important;
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44 outline: 0 !important;
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45 min-width: 0 !important;
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46 max-width: none !important;
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47 min-height: 0 !important;
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48 max-height: none !important;
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49 position: fixed !important;
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50 transform: rotate(0deg) !important;
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51 transform-origin: 50% 50% !important;
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52 border-radius: 0 !important;
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53 box-shadow: none !important;
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54 background: transparent none !important;
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55 pointer-events: none !important;
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56 white-space: normal !important;
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57 }
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58
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59 .firebugBlockBackgroundColor {
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60 background-color: transparent !important;
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61 }
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62
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63 .firebugResetStyles:before, .firebugResetStyles:after {
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64 content: "" !important;
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65 }
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66 /**actual styling to be modified by firebug theme**/
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67 .firebugCanvas {
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68 display: none !important;
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69 }
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70
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71 /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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72 .firebugLayoutBox {
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73 width: auto !important;
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74 position: static !important;
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75 }
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76
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77 .firebugLayoutBoxOffset {
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78 opacity: 0.8 !important;
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79 position: fixed !important;
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80 }
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81
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82 .firebugLayoutLine {
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83 opacity: 0.4 !important;
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84 background-color: #000000 !important;
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85 }
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86
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87 .firebugLayoutLineLeft, .firebugLayoutLineRight {
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88 width: 1px !important;
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89 height: 100% !important;
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90 }
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91
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92 .firebugLayoutLineTop, .firebugLayoutLineBottom {
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93 width: 100% !important;
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94 height: 1px !important;
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95 }
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96
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97 .firebugLayoutLineTop {
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98 margin-top: -1px !important;
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99 border-top: 1px solid #999999 !important;
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100 }
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101
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102 .firebugLayoutLineRight {
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103 border-right: 1px solid #999999 !important;
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104 }
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105
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106 .firebugLayoutLineBottom {
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107 border-bottom: 1px solid #999999 !important;
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108 }
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109
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110 .firebugLayoutLineLeft {
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111 margin-left: -1px !important;
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112 border-left: 1px solid #999999 !important;
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113 }
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114
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115 /* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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116 .firebugLayoutBoxParent {
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117 border-top: 0 none !important;
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118 border-right: 1px dashed #E00 !important;
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119 border-bottom: 1px dashed #E00 !important;
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120 border-left: 0 none !important;
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121 position: fixed !important;
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122 width: auto !important;
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123 }
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124
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125 .firebugRuler{
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126 position: absolute !important;
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127 }
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128
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129 .firebugRulerH {
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130 top: -15px !important;
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131 left: 0 !important;
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132 width: 100% !important;
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133 height: 14px !important;
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134 background: url("data:image/png,%89PNG%0D%0A%1A%0A%00%00%00%0DIHDR%00%00%13%88%00%00%00%0E%08%02%00%00%00L%25a%0A%00%00%00%04gAMA%00%00%D6%D8%D4OX2%00%00%00%19tEXtSoftware%00Adobe%20ImageReadyq%C9e%3C%00%00%04%F8IDATx%DA%EC%DD%D1n%E2%3A%00E%D1%80%F8%FF%EF%E2%AF2%95%D0D4%0E%C1%14%B0%8Fa-%E9%3E%CC%9C%87n%B9%81%A6W0%1C%A6i%9A%E7y%0As8%1CT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AATE9%FE%FCw%3E%9F%AF%2B%2F%BA%97%FDT%1D~K(%5C%9D%D5%EA%1B%5C%86%B5%A9%BDU%B5y%80%ED%AB*%03%FAV9%AB%E1%CEj%E7%82%EF%FB%18%BC%AEJ8%AB%FA'%D2%BEU9%D7U%ECc0%E1%A2r%5DynwVi%CFW%7F%BB%17%7Dy%EACU%CD%0E%F0%FA%3BX%FEbV%FEM%9B%2B%AD%BE%AA%E5%95v%AB%AA%E3E5%DCu%15rV9%07%B5%7F%B5w%FCm%BA%BE%AA%FBY%3D%14%F0%EE%C7%60%0EU%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5JU%88%D3%F5%1F%AE%DF%3B%1B%F2%3E%DAUCNa%F92%D02%AC%7Dm%F9%3A%D4%F2%8B6%AE*%BF%5C%C2Ym~9g5%D0Y%95%17%7C%C8c%B0%7C%18%26%9CU%CD%13i%F7%AA%90%B3Z%7D%95%B4%C7%60%E6E%B5%BC%05%B4%FBY%95U%9E%DB%FD%1C%FC%E0%9F%83%7F%BE%17%7DkjMU%E3%03%AC%7CWj%DF%83%9An%BCG%AE%F1%95%96yQ%0Dq%5Dy%00%3Et%B5'%FC6%5DS%95pV%95%01%81%FF'%07%00%00%00%00%00%00%00%00%00%F8x%C7%F0%BE%9COp%5D%C9%7C%AD%E7%E6%EBV%FB%1E%E0(%07%E5%AC%C6%3A%ABi%9C%8F%C6%0E9%AB%C0'%D2%8E%9F%F99%D0E%B5%99%14%F5%0D%CD%7F%24%C6%DEH%B8%E9rV%DFs%DB%D0%F7%00k%FE%1D%84%84%83J%B8%E3%BA%FB%EF%20%84%1C%D7%AD%B0%8E%D7U%C8Y%05%1E%D4t%EF%AD%95Q%BF8w%BF%E9%0A%BF%EB%03%00%00%00%00%00%00%00%00%00%B8vJ%8E%BB%F5%B1u%8Cx%80%E1o%5E%CA9%AB%CB%CB%8E%03%DF%1D%B7T%25%9C%D5(%EFJM8%AB%CC'%D2%B2*%A4s%E7c6%FB%3E%FA%A2%1E%80~%0E%3E%DA%10x%5D%95Uig%15u%15%ED%7C%14%B6%87%A1%3B%FCo8%A8%D8o%D3%ADO%01%EDx%83%1A~%1B%9FpP%A3%DC%C6'%9C%95gK%00%00%00%00%00%00%00%00%00%20%D9%C9%11%D0%C0%40%AF%3F%EE%EE%92%94%D6%16X%B5%BCMH%15%2F%BF%D4%A7%C87%F1%8E%F2%81%AE%AAvzr%DA2%ABV%17%7C%E63%83%E7I%DC%C6%0Bs%1B%EF6%1E%00%00%00%00%00%00%00%00%00%80cr%9CW%FF%7F%C6%01%0E%F1%CE%A5%84%B3%CA%BC%E0%CB%AA%84%CE%F9%BF)%EC%13%08WU%AE%AB%B1%AE%2BO%EC%8E%CBYe%FE%8CN%ABr%5Dy%60~%CFA%0D%F4%AE%D4%BE%C75%CA%EDVB%EA(%B7%F1%09g%E5%D9%12%00%00%00%00%00%00%00%00%00H%F6%EB%13S%E7y%5E%5E%FB%98%F0%22%D1%B2'%A7%F0%92%B1%BC%24z3%AC%7Dm%60%D5%92%B4%7CEUO%5E%F0%AA*%3BU%B9%AE%3E%A0j%94%07%A0%C7%A0%AB%FD%B5%3F%A0%F7%03T%3Dy%D7%F7%D6%D4%C0%AAU%D2%E6%DFt%3F%A8%CC%AA%F2%86%B9%D7%F5%1F%18%E6%01%F8%CC%D5%9E%F0%F3z%88%AA%90%EF%20%00%00%00%00%00%00%00%00%00%C0%A6%D3%EA%CFi%AFb%2C%7BB%0A%2B%C3%1A%D7%06V%D5%07%A8r%5D%3D%D9%A6%CAu%F5%25%CF%A2%99%97zNX%60%95%AB%5DUZ%D5%FBR%03%AB%1C%D4k%9F%3F%BB%5C%FF%81a%AE%AB'%7F%F3%EA%FE%F3z%94%AA%D8%DF%5B%01%00%00%00%00%00%00%00%00%00%8E%FB%F3%F2%B1%1B%8DWU%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*UiU%C7%BBe%E7%F3%B9%CB%AAJ%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5J%95*U%AAT%A9R%A5*%AAj%FD%C6%D4%5Eo%90%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5%86%AF%1B%9F%98%DA%EBm%BBV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%ADV%AB%D5j%B5Z%AD%D6%E4%F58%01%00%00%00%00%00%00%00%00%00%00%00%00%00%40%85%7F%02%0C%008%C2%D0H%16j%8FX%00%00%00%00IEND%AEB%60%82") repeat-x !important;
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135 border-top: 1px solid #BBBBBB !important;
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136 border-right: 1px dashed #BBBBBB !important;
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137 border-bottom: 1px solid #000000 !important;
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138 }
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139
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140 .firebugRulerV {
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141 top: 0 !important;
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142 left: -15px !important;
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143 width: 14px !important;
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144 height: 100% !important;
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145 background: url("data:image/png,%89PNG%0D%0A%1A%0A%00%00%00%0DIHDR%00%00%00%0E%00%00%13%88%08%02%00%00%00%0E%F5%CB%10%00%00%00%04gAMA%00%00%D6%D8%D4OX2%00%00%00%19tEXtSoftware%00Adobe%20ImageReadyq%C9e%3C%00%00%06~IDATx%DA%EC%DD%D1v%A20%14%40Qt%F1%FF%FF%E4%97%D9%07%3BT%19%92%DC%40(%90%EEy%9A5%CB%B6%E8%F6%9Ac%A4%CC0%84%FF%DC%9E%CF%E7%E3%F1%88%DE4%F8%5D%C7%9F%2F%BA%DD%5E%7FI%7D%F18%DDn%BA%C5%FB%DF%97%BFk%F2%10%FF%FD%B4%F2M%A7%FB%FD%FD%B3%22%07p%8F%3F%AE%E3%F4S%8A%8F%40%EEq%9D%BE8D%F0%0EY%A1Uq%B7%EA%1F%81%88V%E8X%3F%B4%CEy%B7h%D1%A2E%EBohU%FC%D9%AF2fO%8BBeD%BE%F7X%0C%97%A4%D6b7%2Ck%A5%12%E3%9B%60v%B7r%C7%1AI%8C%BD%2B%23r%00c0%B2v%9B%AD%CA%26%0C%1Ek%05A%FD%93%D0%2B%A1u%8B%16-%95q%5Ce%DCSO%8E%E4M%23%8B%F7%C2%FE%40%BB%BD%8C%FC%8A%B5V%EBu%40%F9%3B%A72%FA%AE%8C%D4%01%CC%B5%DA%13%9CB%AB%E2I%18%24%B0n%A9%0CZ*Ce%9C%A22%8E%D8NJ%1E%EB%FF%8F%AE%CAP%19*%C3%BAEKe%AC%D1%AAX%8C*%DEH%8F%C5W%A1e%AD%D4%B7%5C%5B%19%C5%DB%0D%EF%9F%19%1D%7B%5E%86%BD%0C%95%A12%AC%5B*%83%96%CAP%19%F62T%86%CAP%19*%83%96%CA%B8Xe%BC%FE)T%19%A1%17xg%7F%DA%CBP%19*%C3%BA%A52T%86%CAP%19%F62T%86%CA%B0n%A9%0CZ%1DV%C6%3D%F3%FCH%DE%B4%B8~%7F%5CZc%F1%D6%1F%AF%84%F9%0F6%E6%EBVt9%0E~%BEr%AF%23%B0%97%A12T%86%CAP%19%B4T%86%CA%B8Re%D8%CBP%19*%C3%BA%A52huX%19%AE%CA%E5%BC%0C%7B%19*CeX%B7h%A9%0C%95%E1%BC%0C%7B%19*CeX%B7T%06%AD%CB%5E%95%2B%BF.%8F%C5%97%D5%E4%7B%EE%82%D6%FB%CF-%9C%FD%B9%CF%3By%7B%19%F62T%86%CA%B0n%D1R%19*%A3%D3%CA%B0%97%A12T%86uKe%D0%EA%B02*%3F1%99%5DB%2B%A4%B5%F8%3A%7C%BA%2B%8Co%7D%5C%EDe%A8%0C%95a%DDR%19%B4T%C66%82fA%B2%ED%DA%9FC%FC%17GZ%06%C9%E1%B3%E5%2C%1A%9FoiB%EB%96%CA%A0%D5qe4%7B%7D%FD%85%F7%5B%ED_%E0s%07%F0k%951%ECr%0D%B5C%D7-g%D1%A8%0C%EB%96%CA%A0%A52T%C6)*%C3%5E%86%CAP%19%D6-%95A%EB*%95q%F8%BB%E3%F9%AB%F6%E21%ACZ%B7%22%B7%9B%3F%02%85%CB%A2%5B%B7%BA%5E%B7%9C%97%E1%BC%0C%EB%16-%95%A12z%AC%0C%BFc%A22T%86uKe%D0%EA%B02V%DD%AD%8A%2B%8CWhe%5E%AF%CF%F5%3B%26%CE%CBh%5C%19%CE%CB%B0%F3%A4%095%A1%CAP%19*Ce%A8%0C%3BO*Ce%A8%0C%95%A12%3A%AD%8C%0A%82%7B%F0v%1F%2FD%A9%5B%9F%EE%EA%26%AF%03%CA%DF9%7B%19*Ce%A8%0C%95%A12T%86%CA%B8Ze%D8%CBP%19*Ce%A8%0C%95%D1ae%EC%F7%89I%E1%B4%D7M%D7P%8BjU%5C%BB%3E%F2%20%D8%CBP%19*Ce%A8%0C%95%A12T%C6%D5*%C3%5E%86%CAP%19*Ce%B4O%07%7B%F0W%7Bw%1C%7C%1A%8C%B3%3B%D1%EE%AA%5C%D6-%EBV%83%80%5E%D0%CA%10%5CU%2BD%E07YU%86%CAP%19*%E3%9A%95%91%D9%A0%C8%AD%5B%EDv%9E%82%FFKOee%E4%8FUe%A8%0C%95%A12T%C6%1F%A9%8C%C8%3D%5B%A5%15%FD%14%22r%E7B%9F%17l%F8%BF%ED%EAf%2B%7F%CF%ECe%D8%CBP%19*Ce%A8%0C%95%E1%93~%7B%19%F62T%86%CAP%19*Ce%A8%0C%E7%13%DA%CBP%19*Ce%A8%0CZf%8B%16-Z%B4h%D1R%19f%8B%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1%A2%A52%CC%16-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2EKe%98-Z%B4h%D1%A2EKe%D02%5B%B4h%D1%A2EKe%D02%5B%B4h%D1%A2E%8B%96%CA0%5B%B4h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%16-%95a%B6h%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-Z*%C3l%D1%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z%B4T%86%D9%A2E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4h%A9%0C%B3E%8B%16-Z%B4h%A9%0CZf%8B%16-Z%B4h%A9%0CZf%8B%16-Z%B4h%D1R%19f%8B%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1%A2%A52%CC%16-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2EKe%98-Z%B4h%D1%A2EKe%D02%5B%B4h%D1%A2EKe%D02%5B%B4h%D1%A2E%8B%96%CA0%5B%B4h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%16-%95a%B6h%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-Z*%C3l%D1%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z%B4T%86%D9%A2E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4h%A9%0C%B3E%8B%16-Z%B4h%A9%0CZf%8B%16-Z%B4h%A9%0CZf%8B%16-Z%B4h%D1R%19f%8B%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1R%19%B4%CC%16-Z%B4h%D1%A2%A52%CC%16-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2%A52h%99-Z%B4h%D1%A2EKe%98-Z%B4h%D1%A2EKe%D02%5B%B4h%D1%A2EKe%D02%5B%B4h%D1%A2E%8B%96%CA0%5B%B4h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%96%CA%A0e%B6h%D1%A2E%8B%16-%95a%B6h%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-%95A%CBl%D1%A2E%8B%16-Z*%C3l%D1%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z*%83%96%D9%A2E%8B%16-Z%B4T%86%D9%A2E%8B%16-Z%B4T%06-%B3E%8B%16-Z%B4%AE%A4%F5%25%C0%00%DE%BF%5C'%0F%DA%B8q%00%00%00%00IEND%AEB%60%82") repeat-y !important;
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149 }
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164 </style></head>
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174
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176 <!-- CDD info for old design -->
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186
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196 <!-- Reformat and downlaod for new design -->
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197 <!-- aria -->
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198 <!-- aria -->
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199 <form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="POST" name="overview0">
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200
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201
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202
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203 <div id="page">
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204
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205 <div id="summary" class="">
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206 <div id="ht"></div>
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207 <h1>Nucleotide Sequence (16 letters) <span id="hdTitle" class="shownInl"></span></h1>
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208 <div>
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209 <div id="multipleSeqs" class="hidden">
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210 <label for="queryList">Results for:</label>
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211 <select id="queryList" name="queryList">
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212 <option value="0" selected="selected" class="">lcl|59987 None(16bp)</option>
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213 </select>
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214 <a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="queryInfo" title="Multiple quries help" id="queryHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
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215 <span class="ui-icon ui-icon-triangle-1-e"></span></a>
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216 </div><!--/#multipleSeqs"-->
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217
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218 <div class="ui-helper-reset" aria-live="assertive">
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219 <p aria-hidden="true" id="queryInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
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220 Your BLAST job specified more than one input sequence.
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221 This box lets you choose which input sequence to show BLAST results for.
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222 </p>
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223 </div><!-- ARIA -->
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224 </div>
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225 <div id="summarylists">
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226 <dl>
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227 <dt>RID</dt>
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228 <dd>
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229 <a title="BLAST search request ID" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014">PHWP1JNZ014</a> (Expires on 05-07 22:33 pm)
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230 </dd>
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231 </dl>
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232 <div id="querysummary">
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233 <dl>
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234 <dt>Query ID</dt>
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235 <dd class="hidden">
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236 <a title="Find query in Entrez" href="http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Search&db=nucleotide&term=59987&dopt=GenBank" target="lnkPHWP1JNZ014">lcl|59987</a>
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237 </dd>
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238 <dd class="">lcl|59987</dd>
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239 <dt>Description</dt>
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240 <dd>None</dd>
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241 <dt>Molecule type</dt>
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242 <dd>nucleic acid</dd>
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243 <dt>Query Length</dt>
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244 <dd>16</dd>
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245 </dl>
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246 </div><!--/#querysummary-->
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247
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248 <div id="dbsummary">
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249 <dl>
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250 <dt> </dt><dd> </dd>
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251 <dt>Database Name</dt>
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252 <dd>pdb</dd>
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253 <dt>Description</dt>
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254 <dd>PDB nucleotide database <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="See multiple databases detailed information" class="jtg resArrowLinkB hidden jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="dbDetails" id="showDetails"><span class="ui-ncbitoggler-master-text">See details</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd> <!-- -- Database or subject info ---->
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255 <dt class="xgl">Program</dt>
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256 <dd class="xgl">BLASTN 2.2.29+ <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="How to cite BLAST in publications" class="resArrowLinkB hidden shown jig-ncbitoggler ui-ncbitoggler jtg ui-widget" data-ncbitoggler-toggles="refInfo" id="showRefs"><span class="ui-ncbitoggler-master-text">Citation</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd>
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257 </dl>
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258 </div><!--/#dbsummary-->
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259 </div><!--/#summarylists -->
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260 <br>
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261 <div class="ui-helper-reset" aria-live="assertive">
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262 <div aria-hidden="true" id="dbDetails" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
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263 <!-- multiple databases or subjects table -->
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264 </div>
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265 </div> <!-- aria end -->
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266 <div class="ui-helper-reset" aria-live="assertive">
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267 <div aria-hidden="true" id="refInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
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268 <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=9254694&dopt=Citation">Reference </a>
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269 <div>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
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270 Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
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271 "Gapped BLAST and PSI-BLAST: a new generation of protein database search
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272 programs", Nucleic Acids Res. 25:3389-3402.</div>
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273 </div> <!-- refInfo -->
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274 </div> <!-- aria end -->
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275
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276 <div id="seealso">
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277 <label>Other reports:</label>
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278 <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="Show statistics" class="resArrowLinkB jtg jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="resStat" id="showStat"><span class="ui-ncbitoggler-master-text">Search Summary</span><span class="ui-icon ui-icon-triangle-1-e"></span></a>
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279 <span class="xgl">
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280 <a id="tax" class="hidden shown" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=PHWP1JNZ014&FORMAT_OBJECT=TaxBlast&NCBI_GI=off&DESCRIPTIONS=100&ALIGNMENTS=100&FORMAT_BLOCK_ON_RESPAGE=Top&MASK_COLOR=1&MASK_CHAR=2" target="lnkPHWP1JNZ014" title="See results arranged by taxonomy">[Taxonomy reports]</a>
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281 <a href="http://www.ncbi.nlm.nih.gov/blast/treeview/treeView.cgi?request=page&blastRID=PHWP1JNZ014&queryID=lcl%7C59987&entrezLim=&ex=&exl=&exh=&ns=100" class="" id="TreeViewlcl|59987" onclick="ViewTree('TreeViewlcl|59987');return false;" target="lnkPHWP1JNZ014" title="See a distance tree of these pairwise comparisons">[Distance tree of results]</a>
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282
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283
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284
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285 </span>
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286 </div> <!-- seealso -->
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287
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288 <div class="ui-helper-reset" aria-live="assertive">
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289 <div aria-hidden="true" id="resStat" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
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290 <table id="params" class="dbInfo">
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291 <caption>Search Parameters</caption>
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292 <tbody><tr><th><div>Search parameter name</div></th><th><div>Search parameter value</div></th></tr>
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293 <tr><td>Program</td><td>blastn</td></tr><tr><td>Word size</td><td>7</td></tr><tr><td>Expect value</td><td>1000</td></tr><tr><td>Hitlist size</td><td>100</td></tr><tr><td>Match/Mismatch scores</td><td>1,-3</td></tr><tr><td>Gapcosts</td><td>5,2</td></tr><tr><td>Filter string </td><td>F</td></tr><tr><td>Genetic Code</td><td>1</td></tr>
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294 </tbody></table>
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295 <table id="dbStat" class="dbInfo">
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296 <caption>Database</caption>
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297 <tbody><tr><th><div>Database parameter name</div></th><th><div>Database parameter value</div></th></tr>
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298 <tr><td>Posted date</td><td>Apr 29, 2014 3:14 AM</td></tr>
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299 <tr><td>Number of letters</td><td>885,284</td></tr>
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300 <tr><td>Number of sequences</td><td>8,975</td></tr>
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301 <tr><td>Entrez query</td><td>none</td></tr>
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302 </tbody></table>
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303
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304 <table id="Kappa" class="dbInfo show xgl">
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305 <caption>Karlin-Altschul statistics</caption>
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306 <tbody><tr><th><div>Params</div></th><th><div>Ungapped</div></th><th><div>Gapped</div></th></tr>
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307 <tr><td>Lambda</td><td>1.37406</td><td>1.37406</td></tr>
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308 <tr><td>K</td><td>0.710603</td><td>0.710603</td></tr>
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309 <tr><td>H</td><td>1.30725</td><td>1.30725</td></tr>
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310
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311 </tbody></table>
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312
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313
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314 <table class="dbInfo show">
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315 <caption>Results Statistics</caption>
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316 <tbody><tr><th><div>Results Statistics parameter name</div></th><th><div>Results Statistics parameter value</div></th></tr>
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317 <tr><td>Length adjustment</td><td> 11</td></tr><tr><td>Effective length of query</td><td> 5</td></tr><tr><td>Effective length of database</td><td> 786559</td></tr><tr><td>Effective search space</td><td> 3932795</td></tr><tr><td>Effective search space used</td><td> 3932795</td></tr>
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318 </tbody></table>
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319 <!-- Results statistics -->
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320 </div> <!-- resStat -->
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321 </div> <!-- aria end -->
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322 </div><!--/#summary-->
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323 </div><!--/#page-->
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324
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325
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326 <div id="grView" class="hidden shown">
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327 <h2 class="resArr">
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328 <a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showGraphic" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="graphicInfo" title="Show/hide Graphic Summary">
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329 <span class="ui-ncbitoggler-master-text">Graphic Summary</span>
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330 <span class="ui-icon ui-icon-plus-minus-big-open"></span>
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331 </a>
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332 </h2>
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333 <div class="ui-helper-reset" aria-live="assertive">
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334 <div aria-hidden="false" id="graphicInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
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335
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336
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337 <div id="graphic" class="hidden shown">
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338 <h3>Distribution of 45 Blast Hits on the Query Sequence
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339 <a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Graphic summary help" id="grHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
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340 <span class="ui-icon ui-icon-triangle-1-e"></span></a></h3>
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341 <div class="ui-helper-reset" aria-live="assertive">
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342 <p aria-hidden="true" id="ovrInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler">
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343 An overview of the database sequences aligned to the query sequence is
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344 shown. The score of each alignment is indicated by one of five
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345 different colors, which divides the range of scores into five groups.
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346 Multiple alignments on the same database sequence are connected
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347 by a striped line. <span class="hl">Mousing over</span> a hit sequence causes the definition and score to be shown in the window at the top,
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348 <span class="hl">clicking</span> on a hit sequence takes the user to the associated alignments.
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349 New:
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350 This graphic is an overview of database sequences aligned to the query sequence.
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351 Alignments are color-coded by score, within one of five score ranges.
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352 Multiple alignments on the same database sequence are connected by a dashed line.
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353 <span class="hl">Mousing</span> over an alignment shows the alignment definition and score in the box at the top.
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354 <span class="hl">Clicking</span> an alignment displays the alignment detail.
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355 </p>
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356 </div><!-- ARIA -->
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357 <center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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358 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/score.gif" height="40" width="500"></td>
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359 </tr></tbody></table>
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360 <table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/query_no_scale.gif" height="10" width="550"></td></tr></tbody></table>
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361 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="51"></td>
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362 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
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363 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
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364 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
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365 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
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366 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
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367 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
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368 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
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369 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
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370 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
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371 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td>
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372 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td>
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373 </tr></tbody></table>
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374 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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375 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td>
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376 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td>
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377 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/3.gif" height="13" width="10"></td>
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378 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td>
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379 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/6.gif" height="13" width="10"></td>
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380 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td>
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381 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/9.gif" height="13" width="10"></td>
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382 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="73"></td>
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383 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td>
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384 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/2.gif" height="13" width="10"></td>
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385 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="73"></td>
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386 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td>
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387 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/5.gif" height="13" width="10"></td>
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388 </tr></tbody></table>
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389 <br><table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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390 <td align="LEFT" valign="CENTER"><a href="#557804451" onclick='DisplayAlignFromGraphics("557804451",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J5A_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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391 </tr></tbody></table>
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392 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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393 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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394 <td align="LEFT" valign="CENTER"><a href="#557804395" onclick='DisplayAlignFromGraphics("557804395",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J58_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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395 </tr></tbody></table>
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396 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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397 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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398 <td align="LEFT" valign="CENTER"><a href="#557804339" onclick='DisplayAlignFromGraphics("557804339",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J56_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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399 </tr></tbody></table>
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400 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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401 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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402 <td align="LEFT" valign="CENTER"><a href="#557804283" onclick='DisplayAlignFromGraphics("557804283",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J54_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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403 </tr></tbody></table>
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404 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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405 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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406 <td align="LEFT" valign="CENTER"><a href="#557804227" onclick='DisplayAlignFromGraphics("557804227",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J52_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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407 </tr></tbody></table>
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408 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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409 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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410 <td align="LEFT" valign="CENTER"><a href="#557804195" onclick='DisplayAlignFromGraphics("557804195",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J51_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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411 </tr></tbody></table>
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412 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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413 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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414 <td align="LEFT" valign="CENTER"><a href="#557804163" onclick='DisplayAlignFromGraphics("557804163",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J50_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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415 </tr></tbody></table>
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416 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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417 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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418 <td align="LEFT" valign="CENTER"><a href="#557804083" onclick='DisplayAlignFromGraphics("557804083",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J4X_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td>
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419 </tr></tbody></table>
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420 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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421 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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422 <td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. Sapiens 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="250"></a></td>
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423 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
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424 <td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. Sapiens 60s Rrna S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td>
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425 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
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426 <td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. Sapiens 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td>
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427 </tr></tbody></table>
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428 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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429 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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430 <td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 14" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=14 E=1.9e+02'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="219"></a></td>
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431 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
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432 <td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="155"></a></td>
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433 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td>
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434 <td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td>
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435 </tr></tbody></table>
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436 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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437 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
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438 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="94"></td>
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439 <td align="LEFT" valign="CENTER"><a href="#357380483" onclick='DisplayAlignFromGraphics("357380483",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J0O_8 Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex .. S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="281"></a></td>
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440 </tr></tbody></table>
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441 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table>
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442 </td></tr></tbody></table>
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443 </center><hr>
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444 </div><!--/#graphic-->
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445 </div><!-- graphicInfo -->
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446 </div><!-- ARIA -->
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447 </div>
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448 <!--HITMATRIX_VIEW - only for bl2seq -->
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449
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450 <div id="dscrView" class="hidden shown">
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451 <h2 class="resArr">
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452 <a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showDescr" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="descrInfo" title="Show/hide Descriptions">
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453 <span class="ui-ncbitoggler-master-text">Descriptions</span>
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454 <span class="ui-icon ui-icon-plus-minus-big-open"></span>
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455 </a>
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456 </h2>
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457 <div class="ui-helper-reset" aria-live="assertive">
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458 <div aria-hidden="false" id="descrInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
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459 <!-- legend to links to other resources -->
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460 <a name="sort_mark"></a>
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461
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462
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463 <div id="debug">, Reading indexes 1-5, displaying indexes 1-5</div>
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464 <input id="Rid" value="PHWP1JNZ014" type="hidden">
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465 <input id="useAlignDB" name="useAlignDB" value="" type="hidden">
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466 <input id="dbType" value="GenBank" type="hidden"><!-- Indicates genbank, etc -->
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467 <input id="serviceType" value="plain" type="hidden">
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468 <input id="clientType" value="web" type="hidden">
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469 <input id="currQuery" value="" type="hidden">
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470 <input id="minDispAlnLen" value="2000" type="hidden">
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471 <input id="maxDispAlnLen" value="20000" type="hidden">
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472 <div class="hidden" id="dynHspTmpl"><div class="alnParLinks moreHsps" id="@moreHspsID@"><a class="gbd toolsCtr navNext" title="Load matches @segs@ out of @totalHSP@ for @accs@" onmouseover="scan(this)" ref="range=@segs@&currseq=@alnSeqGi@" onclick="ReadNextHSPSet(@argstring@);"><span>Load next set</span></a><a class="gbd toolsCtr navPrev" title="Go to previous match #@aln_prev_num@ for @accs@" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a></div></div>
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473 <div id="descriptions" class="blRes">
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474 <!--<pre> -->
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475 <div class="cap">Sequences producing significant alignments:</div>
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476 <a id="shcl" href="#" onclick="showAllCol(event,this)" class="shcl hidden">
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477 Show all columns <span class="accsb"> of the table presenting sequences producing significant alignments </span>
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478 </a>
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479 <span id="cntDesc">
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480 <span>Select:<a href="#" id="cntSelA" sel="all">All</a><a href="#" id="cntSelN" sel="n">None</a></span>
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481 <span>Selected:<span id="slcNum">0</span></span>
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482 </span>
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483
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484 <div id="descTblCtrl" class="cnf">
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485 <a href="#alignInfo" id="alnNav" class="toolsCtr alnNav" title="Go to alignments"><span>Alignments</span></a>
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486 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dsDownload" minslct="1" class="jig-ncbipopper toolsCtr dnld dialog " data-jigconfig="hasArrow:'true',arrowDirection:'top'" id="dscDwnld" disabled="disabled" title="Download information for selected sequences"><span>Download</span></a>
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487
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488 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsDownload" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
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489 <div class=""><input name="dwn" checked="checked" id="dwFST" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST">FASTA (complete sequence)</label></div>
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490 <div class=""><input name="dwn" id="dwFSTAl" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl">FASTA (aligned sequences)</label></div>
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491 <div class=""><input name="dwn" id="dwGenBank" getgi="on" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class=" shownInl" for="dwGenBank">GenBank (complete sequence)</label></div>
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492 <div><input name="dwn" id="dwHitText" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=Text&FORMAT_OBJECT=Alignment&ALIGNMENT_VIEW=Tabular&CMD=Get" type="radio"><label class="shownInl" for="dwHitText">Hit Table (text)</label></div>
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493 <div><input name="dwn" id="dwHitCsv" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=CSV&FORMAT_OBJECT=Alignment&ALIGNMENT_VIEW=Tabular&CMD=Get" type="radio"><label class="shownInl" for="dwHitCsv">Hit Table (CSV)</label></div>
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494 <div><input name="dwn" id="dwText" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=Text&FORMAT_OBJECT=Alignment&CMD=Get" type="radio"><label class="shownInl" for="dwText">Text</label></div>
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495 <div><input name="dwn" id="dwXML" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=XML&FORMAT_OBJECT=Alignment&CMD=Get" type="radio"><label class="shownInl" for="dwXML">XML</label></div>
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496 <div><input name="dwn" id="dwASN" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=ASN.1&FORMAT_OBJECT=Alignment&CMD=Get" type="radio"><label class="shownInl" for="dwASN">ASN.1</label></div>
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497 <div>
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498 <button class="cfg" id="dw_cont">Continue</button>
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499 <button class="cfg cnc">Cancel</button>
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500 </div>
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501 </div> <!-- dsDownload -->
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502
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503
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504
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505
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506
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507 <a href="#" class="toolsCtr" minslct="1" view="dflt" frm="submitterTop" seqlist="selSeqs" title="See genbank report for selected sequences" disabled="disabled">GenBank</a> <!-- genbank or Traces -->
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508 <a href="#" class="toolsCtr " minslct="1" view="graph" title="See graphic representation for selected sequences" disabled="disabled">Graphics</a>
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509 <a href="#" class="toolsCtr hidden shown" view="tree" minslct="1" frm="sbmtTreeView" seqlist="selSeqsTr" disabled="disabled" title="See a distance tree of pairwise comparisons for the selected sequences">Distance tree of results</a>
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510 <a href="#" class="toolsCtr hidden " view="dflt" minslct="2" frm="sbmtMultiAln" seqlist="selSeqsMl" disabled="disabled" title="See multple alignment of query and target sequences for the selected sequences with expect value better than 0.001">Multiple alignment</a>
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511
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512 <a aria-haspopup="true" aria-expanded="false" role="button" class="jig-ncbipopper button_config" title="Show/hide columns" id="button_config" href="#dsConfig"><span class="accsb">Show/hide columns of the table presenting sequences producing significant alignments </span></a>
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513
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514 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsConfig" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
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515 <div class="tl">Available columns</div>
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516 <input checked="checked" id="chkDs" value="2" type="checkbox"><label class="shownInl" for="chkDs">Description</label><br>
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517 <input checked="checked" id="chkMS" value="3" type="checkbox"><label class="shownInl" for="chkMs">Max Score</label><br>
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518 <input checked="checked" id="chkTS" value="4" type="checkbox"><label class="shownInl" for="chkTs">Total Score</label><br>
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519 <input checked="checked" id="chkCov" value="5" type="checkbox"><label class="shownInl" for="chkCov">Coverage</label><br>
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520 <input checked="checked" id="chkEval" value="6" type="checkbox"><label class="shownInl" for="chkEval">E-value</label><br>
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521 <input checked="checked" id="chkIdnt" value="7" type="checkbox"><label class="shownInl" for="chkIdnt"><span class="">Ident</span><span class="hidden">N</span></label><br>
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522 <input checked="checked" id="chkAcc" value="8" type="checkbox"><label class="shownInl" for="chkAcc">Accession</label><br>
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523 <button class="cfg rdf" id="dscRsDf">Restore Defaults</button>
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524 <button class="cfg" id="dscOk">Ok</button>
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525 <button class="cfg cnc" id="dscCnc">Cancel</button>
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526 </div> <!-- dsConfig -->
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527
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528 <input id="cfcDsInf" defval="2,3,4,5,6,7,8" value="2,3,4,5,6,7,8" type="hidden">
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529 </div>
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530 <div class="ui-ncbigrid-outer-div caption-exists">
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531 <div class="ui-ncbigrid-inner-div">
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532 <table id="dscTable" class="jig-ncbigrid ui-ncbigrid" data-jigconfig="" cellpadding="0" cellspacing="0">
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533 <caption class="hdnHeader">Sequences producing significant alignments:</caption>
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534 <thead>
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535 <tr class="first">
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536 <th class="c0" id="c0"><span>Select for downloading or viewing reports</span></th>
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537 <th class="dflnDth c2" id="c2">Description</th>
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538 <th class=" c3" id="c3">
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539
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540 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&OLD_VIEW=false&DISPLAY_SORT=1&HSP_SORT=1" class="dcs" title="Sort by max score">Max score</a>
|
|
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541 </th>
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542 <th class=" c4" id="c4">
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543 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&OLD_VIEW=false&DISPLAY_SORT=2&HSP_SORT=1" class="dcs" title="Sort by total score">Total score</a>
|
|
|
544 </th>
|
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|
545 <th class=" c5" id="c5">
|
|
|
546 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&OLD_VIEW=false&DISPLAY_SORT=4&HSP_SORT=0" class="dcs" title="Sort by query coverage">Query cover</a>
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|
|
547 </th>
|
|
|
548 <th class="sel c6" id="c6">
|
|
|
549 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&OLD_VIEW=false&DISPLAY_SORT=0&HSP_SORT=0" class="dcs" title="Sort by E value">E value</a>
|
|
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550 </th>
|
|
|
551 <th class="c7" id="c7">
|
|
|
552 <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&DISPLAY_SORT=3&HSP_SORT=3" class="dcs" title="Sort by ident">Ident</a>
|
|
|
553 </th>
|
|
|
554
|
|
|
555 <th class="c1" id="c8">Accession</th>
|
|
|
556 </tr>
|
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|
557 </thead>
|
|
|
558 <tbody>
|
|
|
559 <tr id="dtr_557804451" ind="1" class="odd dflLnk">
|
|
|
560 <td class="l c0"><span class="ind">1</span><input id="chk_1" class="cb" name="getSeqGi" value="557804451" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_1" class="accsb">Select seq pdb|3J5A|A</label></td>
|
|
|
561 <td class="lim l c2">
|
|
|
562 <div class="lim n">
|
|
|
563 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="1" accs="pdb|3J5A|A" seqfsta="gi|557804451" gi="557804451" seqid="557804451" id="deflnDesc_1" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804451">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)</a>
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|
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564 </div>
|
|
|
565 </td>
|
|
|
566 <td class="c3">32.2</td>
|
|
|
567 <td class="c4">77.3</td>
|
|
|
568 <td class="c5">100%</td>
|
|
|
569 <td class="c6">8e-04</td><td class="c7">100%</td>
|
|
|
570 <td class="c1 l lim">
|
|
|
571 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nucltop&blast_rank=1&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J5A_A">3J5A_A</a>
|
|
|
572 </td>
|
|
|
573 </tr><tr id="dtr_557804395" ind="2" class="even dflLnk">
|
|
|
574 <td class="l c0"><span class="ind">2</span><input id="chk_2" class="cb" name="getSeqGi" value="557804395" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_2" class="accsb">Select seq pdb|3J58|A</label></td>
|
|
|
575 <td class="lim l c2">
|
|
|
576 <div class="lim n">
|
|
|
577 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="2" accs="pdb|3J58|A" seqfsta="gi|557804395" gi="557804395" seqid="557804395" id="deflnDesc_2" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804395">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)</a>
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|
|
578 </div>
|
|
|
579 </td>
|
|
|
580 <td class="c3">32.2</td>
|
|
|
581 <td class="c4">77.3</td>
|
|
|
582 <td class="c5">100%</td>
|
|
|
583 <td class="c6">8e-04</td><td class="c7">100%</td>
|
|
|
584 <td class="c1 l lim">
|
|
|
585 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nucltop&blast_rank=2&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J58_A">3J58_A</a>
|
|
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586 </td>
|
|
|
587 </tr><tr id="dtr_557804339" ind="3" class="odd dflLnk">
|
|
|
588 <td class="l c0"><span class="ind">3</span><input id="chk_3" class="cb" name="getSeqGi" value="557804339" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_3" class="accsb">Select seq pdb|3J56|A</label></td>
|
|
|
589 <td class="lim l c2">
|
|
|
590 <div class="lim n">
|
|
|
591 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="3" accs="pdb|3J56|A" seqfsta="gi|557804339" gi="557804339" seqid="557804339" id="deflnDesc_3" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804339">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)</a>
|
|
|
592 </div>
|
|
|
593 </td>
|
|
|
594 <td class="c3">32.2</td>
|
|
|
595 <td class="c4">77.3</td>
|
|
|
596 <td class="c5">100%</td>
|
|
|
597 <td class="c6">8e-04</td><td class="c7">100%</td>
|
|
|
598 <td class="c1 l lim">
|
|
|
599 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nucltop&blast_rank=3&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J56_A">3J56_A</a>
|
|
|
600 </td>
|
|
|
601 </tr><tr id="dtr_557804283" ind="4" class="even dflLnk">
|
|
|
602 <td class="l c0"><span class="ind">4</span><input id="chk_4" class="cb" name="getSeqGi" value="557804283" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_4" class="accsb">Select seq pdb|3J54|A</label></td>
|
|
|
603 <td class="lim l c2">
|
|
|
604 <div class="lim n">
|
|
|
605 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="4" accs="pdb|3J54|A" seqfsta="gi|557804283" gi="557804283" seqid="557804283" id="deflnDesc_4" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804283">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)</a>
|
|
|
606 </div>
|
|
|
607 </td>
|
|
|
608 <td class="c3">32.2</td>
|
|
|
609 <td class="c4">77.3</td>
|
|
|
610 <td class="c5">100%</td>
|
|
|
611 <td class="c6">8e-04</td><td class="c7">100%</td>
|
|
|
612 <td class="c1 l lim">
|
|
|
613 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nucltop&blast_rank=4&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J54_A">3J54_A</a>
|
|
|
614 </td>
|
|
|
615 </tr><tr id="dtr_557804227" ind="5" class="odd dflLnk">
|
|
|
616 <td class="l c0"><span class="ind">5</span><input id="chk_5" class="cb" name="getSeqGi" value="557804227" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_5" class="accsb">Select seq pdb|3J52|A</label></td>
|
|
|
617 <td class="lim l c2">
|
|
|
618 <div class="lim n">
|
|
|
619 <a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="5" accs="pdb|3J52|A" seqfsta="gi|557804227" gi="557804227" seqid="557804227" id="deflnDesc_5" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804227">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)</a>
|
|
|
620 </div>
|
|
|
621 </td>
|
|
|
622 <td class="c3">32.2</td>
|
|
|
623 <td class="c4">77.3</td>
|
|
|
624 <td class="c5">100%</td>
|
|
|
625 <td class="c6">8e-04</td><td class="c7">100%</td>
|
|
|
626 <td class="c1 l lim">
|
|
|
627 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nucltop&blast_rank=5&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J52_A">3J52_A</a>
|
|
|
628 </td>
|
|
|
629 </tr><tr id="dtr_557804195" ind="6" class="even dflLnk">
|
|
|
630 <td class="l c0"><span class="ind">6</span><input id="chk_6" class="cb" name="getSeqGi" value="557804195" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_6" class="accsb">Select seq pdb|3J51|A</label></td>
|
|
|
631 <td class="lim l c2">
|
|
|
632 <div class="lim n">
|
|
|
633 <a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="6" accs="pdb|3J51|A" seqfsta="gi|557804195" gi="557804195" seqid="557804195" id="deflnDesc_6" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804195">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)</a>
|
|
|
634 </div>
|
|
|
635 </td>
|
|
|
636 <td class="c3">32.2</td>
|
|
|
637 <td class="c4">77.3</td>
|
|
|
638 <td class="c5">100%</td>
|
|
|
639 <td class="c6">8e-04</td><td class="c7">100%</td>
|
|
|
640 <td class="c1 l lim">
|
|
|
641 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804195?report=genbank&log$=nucltop&blast_rank=6&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J51_A">3J51_A</a>
|
|
|
642 </td>
|
|
|
643 </tr><tr id="dtr_557804163" ind="7" class="odd dflLnk">
|
|
|
644 <td class="l c0"><span class="ind">7</span><input id="chk_7" class="cb" name="getSeqGi" value="557804163" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_7" class="accsb">Select seq pdb|3J50|A</label></td>
|
|
|
645 <td class="lim l c2">
|
|
|
646 <div class="lim n">
|
|
|
647 <a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="7" accs="pdb|3J50|A" seqfsta="gi|557804163" gi="557804163" seqid="557804163" id="deflnDesc_7" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804163">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)</a>
|
|
|
648 </div>
|
|
|
649 </td>
|
|
|
650 <td class="c3">32.2</td>
|
|
|
651 <td class="c4">77.3</td>
|
|
|
652 <td class="c5">100%</td>
|
|
|
653 <td class="c6">8e-04</td><td class="c7">100%</td>
|
|
|
654 <td class="c1 l lim">
|
|
|
655 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804163?report=genbank&log$=nucltop&blast_rank=7&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J50_A">3J50_A</a>
|
|
|
656 </td>
|
|
|
657 </tr><tr id="dtr_557804083" ind="8" class="even dflLnk">
|
|
|
658 <td class="l c0"><span class="ind">8</span><input id="chk_8" class="cb" name="getSeqGi" value="557804083" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_8" class="accsb">Select seq pdb|3J4X|A</label></td>
|
|
|
659 <td class="lim l c2">
|
|
|
660 <div class="lim n">
|
|
|
661 <a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="8" accs="pdb|3J4X|A" seqfsta="gi|557804083" gi="557804083" seqid="557804083" id="deflnDesc_8" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804083">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)</a>
|
|
|
662 </div>
|
|
|
663 </td>
|
|
|
664 <td class="c3">32.2</td>
|
|
|
665 <td class="c4">77.3</td>
|
|
|
666 <td class="c5">100%</td>
|
|
|
667 <td class="c6">8e-04</td><td class="c7">100%</td>
|
|
|
668 <td class="c1 l lim">
|
|
|
669 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804083?report=genbank&log$=nucltop&blast_rank=8&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J4X_A">3J4X_A</a>
|
|
|
670 </td>
|
|
|
671 </tr><tr id="dtr_485601478" ind="9" class="odd dflLnk">
|
|
|
672 <td class="l c0"><span class="ind">9</span><input id="chk_9" class="cb" name="getSeqGi" value="485601478" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_9" class="accsb">Select seq pdb|3J3F|5</label></td>
|
|
|
673 <td class="lim l c2">
|
|
|
674 <div class="lim n">
|
|
|
675 <a title="Go to alignment for Chain 5, Structure Of The H. Sapiens 60s Rrna" class="deflnDesc" hsp="8" len="63" ind="9" accs="pdb|3J3F|5" seqfsta="gi|485601478" gi="485601478" seqid="485601478" id="deflnDesc_9" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_485601478">Chain 5, Structure Of The H. Sapiens 60s Rrna</a>
|
|
|
676 </div>
|
|
|
677 </td>
|
|
|
678 <td class="c3">18.3</td>
|
|
|
679 <td class="c4"> 128</td>
|
|
|
680 <td class="c5">100%</td>
|
|
|
681 <td class="c6"> 12</td><td class="c7">100%</td>
|
|
|
682 <td class="c1 l lim">
|
|
|
683 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/485601478?report=genbank&log$=nucltop&blast_rank=9&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J3F_5">3J3F_5</a>
|
|
|
684 </td>
|
|
|
685 </tr><tr id="dtr_485601474" ind="10" class="even dflLnk">
|
|
|
686 <td class="l c0"><span class="ind">10</span><input id="chk_10" class="cb" name="getSeqGi" value="485601474" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_10" class="accsb">Select seq pdb|3J3E|5</label></td>
|
|
|
687 <td class="lim l c2">
|
|
|
688 <div class="lim n">
|
|
|
689 <a title="Go to alignment for Chain 5, Structure Of The D. Melanogaster 60s Rrna" class="deflnDesc" hsp="4" len="31" ind="10" accs="pdb|3J3E|5" seqfsta="gi|485601474" gi="485601474" seqid="485601474" id="deflnDesc_10" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_485601474">Chain 5, Structure Of The D. Melanogaster 60s Rrna</a>
|
|
|
690 </div>
|
|
|
691 </td>
|
|
|
692 <td class="c3">18.3</td>
|
|
|
693 <td class="c4">63.4</td>
|
|
|
694 <td class="c5">100%</td>
|
|
|
695 <td class="c6"> 12</td><td class="c7">100%</td>
|
|
|
696 <td class="c1 l lim">
|
|
|
697 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/485601474?report=genbank&log$=nucltop&blast_rank=10&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J3E_5">3J3E_5</a>
|
|
|
698 </td>
|
|
|
699 </tr><tr id="dtr_357380483" ind="11" class="odd dflLnk">
|
|
|
700 <td class="l c0"><span class="ind">11</span><input id="chk_11" class="cb" name="getSeqGi" value="357380483" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_11" class="accsb">Select seq pdb|3J0O|8</label></td>
|
|
|
701 <td class="lim l c2">
|
|
|
702 <div class="lim n">
|
|
|
703 <a title="Go to alignment for Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2" class="deflnDesc" hsp="1" len="9" ind="11" accs="pdb|3J0O|8" seqfsta="gi|357380483" gi="357380483" seqid="357380483" id="deflnDesc_11" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_357380483">Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2</a>
|
|
|
704 </div>
|
|
|
705 </td>
|
|
|
706 <td class="c3">18.3</td>
|
|
|
707 <td class="c4">18.3</td>
|
|
|
708 <td class="c5">56%</td>
|
|
|
709 <td class="c6"> 12</td><td class="c7">100%</td>
|
|
|
710 <td class="c1 l lim">
|
|
|
711 <a href="http://www.ncbi.nlm.nih.gov/nucleotide/357380483?report=genbank&log$=nucltop&blast_rank=11&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J0O_8">3J0O_8</a>
|
|
|
712 </td>
|
|
|
713 </tr>
|
|
|
714 </tbody>
|
|
|
715 </table>
|
|
|
716 </div></div>
|
|
|
717 <!--</pre> -->
|
|
|
718 </div><!--/#descriptions-->
|
|
|
719 </div><!-- descrInfo -->
|
|
|
720 </div><!--ARIA-->
|
|
|
721 </div>
|
|
|
722 </form><!-- this is the end tag for the <form in blastcgi templates -->
|
|
|
723
|
|
|
724
|
|
|
725
|
|
|
726
|
|
|
727
|
|
|
728 <!-- used in redesign -->
|
|
|
729
|
|
|
730 <div id="alignView" class=" ">
|
|
|
731 <h2 class="resArr">
|
|
|
732 <a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showAlign" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="alignInfo" title="Show/hide Alignments">
|
|
|
733 <span class="ui-ncbitoggler-master-text">Alignments</span>
|
|
|
734 <span class="ui-icon ui-icon-plus-minus-big-open"></span>
|
|
|
735 </a>
|
|
|
736 </h2>
|
|
|
737
|
|
|
738 <div class="ui-helper-reset" aria-live="assertive">
|
|
|
739 <div aria-hidden="false" id="alignInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
|
|
|
740 <div id="alignments" class="blRes">
|
|
|
741 <span id="alnStart"></span><div seqlist="gi|557804451,gi|557804395,gi|557804339,gi|557804283,gi|557804227" indexes="1-5" id="alnShow_1" class="alnMsg"><div class="alnMsgS hidden" id="alnMsg_1">Loading alignment...<span class="db"> for sequences gi|557804451,gi|557804395,gi|557804339,gi|557804283,gi|557804227 Reading indexes 1-5</span></div><div id="alnShowReal_1" class="alnMsgR"><form name="getSeqAlignment1">
|
|
|
742 <div class="alnHdr cnf" id="alnHdr_557804451" seqid="557804451" accs="pdb|3J5A|A">
|
|
|
743 <a name="557804451"></a>
|
|
|
744 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804451" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804451" title="Download information for pdb|3J5A|A"><span>Download</span></a>
|
|
|
745 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804451" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
|
|
|
746 <div><input seqfsta="gi|557804451" name="dwn_557804451" checked="checked" id="dwFST_557804451" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804451">FASTA (complete sequence)</label></div>
|
|
|
747 <div><input seqfsta="gi|557804451" name="dwn_557804451" id="dwFSTAl_557804451" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804451">FASTA (aligned sequences)</label></div>
|
|
|
748 <div class=""><input name="dwn_557804451" id="dwGenBank_557804451" getgi="557804451" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804451">GenBank (complete sequence)</label></div>
|
|
|
749 <div>
|
|
|
750 <button class="cfg" id="dw_cont_557804451">Continue</button>
|
|
|
751 <button class="cfg cnc">Cancel</button>
|
|
|
752 </div>
|
|
|
753 </div> <!-- dsDownload -->
|
|
|
754 <span class="csLinks" id="csLinks_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics">Graphics</a></span>
|
|
|
755
|
|
|
756 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
|
|
|
757 <select id="sa_557804451" onchange="SortHSPAlnSel(event,this)">
|
|
|
758 <option selected="selected" value="0">E value</option>
|
|
|
759 <option value="1"> Score</option>
|
|
|
760 <option value="3">Percent identity</option>
|
|
|
761 <option value="2">Query start position</option>
|
|
|
762 <option value="4">Subject start position</option>
|
|
|
763 </select>
|
|
|
764 </div>
|
|
|
765 <span class="alnSeqLinks">
|
|
|
766 <a title="Go to next alignment for pdb|3J58|A" class="gbd toolsCtr navNext" ref="ordinalpos=1&currseq=557804451" id="alnNxt_557804451" onclick="goToNextAlign('dtr_557804451',true);"><span>Next</span></a>
|
|
|
767 <a disabled="disabled" class="gbd toolsCtr navPrev" ref="ordinalpos=1&currseq=557804451" id="alnPrv_557804451" onclick="goToNextAlign('dtr_557804451',false);"><span>Previous</span></a>
|
|
|
768 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J5A|A" id="alnDsc_557804451" onclick="goToDefLine('dtr_557804451');" href="#dtr_557804451"><span>Descriptions</span></a>
|
|
|
769 </span>
|
|
|
770 </div>
|
|
|
771 <div class="oneSeqAln" id="aln_557804451">
|
|
|
772 <div id="dln_557804451">
|
|
|
773 <div class="dlfRow">
|
|
|
774 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)
|
|
|
775 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J5A|A">pdb|3J5A|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
|
|
|
776 </div>
|
|
|
777 </div>
|
|
|
778 <div class="relInf" id="relInf_557804451"><label>Related Information</label></div>
|
|
|
779 <!--
|
|
|
780 <pre>
|
|
|
781 <@aln_gene_info@>
|
|
|
782 </pre>
|
|
|
783 -->
|
|
|
784 <div class="alnAll" id="alnAll_557804451"><div id="hd_557804451_1">
|
|
|
785 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
|
|
|
786 <span id="hsp557804451_1" class="alnParLinks">
|
|
|
787 <a init="on" class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
788 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
789 <a class="gbd toolsCtr navBack hidden" href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
|
|
|
790 </span>
|
|
|
791 </div>
|
|
|
792 <table class="alnParams">
|
|
|
793 <caption class="hdnHeader">Alignment statistics for match #1</caption>
|
|
|
794 <tbody><tr>
|
|
|
795 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
796 </tr>
|
|
|
797 <tr>
|
|
|
798 <td>32.2 bits(16)</td>
|
|
|
799 <td>8e-04<span class="sumN ">()</span></td>
|
|
|
800 <td>16/16(100%)</td>
|
|
|
801 <td>0/16(0%)</td>
|
|
|
802 <td>Plus/Plus</td>
|
|
|
803 <td class="aln_frame "></td>
|
|
|
804 </tr></tbody></table>
|
|
|
805 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
806 </div>
|
|
|
807 <div id="ar_557804451_1">
|
|
|
808 <pre>Query 1 CGTCCGTCGTGAAGAG 16
|
|
|
809 ||||||||||||||||
|
|
|
810 Sbjct 961 CGTCCGTCGTGAAGAG 976
|
|
|
811
|
|
|
812
|
|
|
813 </pre>
|
|
|
814 </div>
|
|
|
815 <div id="hd_557804451_2">
|
|
|
816 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
|
|
|
817 <span id="hsp557804451_2" class="alnParLinks">
|
|
|
818 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
819 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
820 <a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
|
|
|
821 </span>
|
|
|
822 </div>
|
|
|
823 <table class="alnParams">
|
|
|
824 <caption class="hdnHeader">Alignment statistics for match #2</caption>
|
|
|
825 <tbody><tr>
|
|
|
826 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
827 </tr>
|
|
|
828 <tr>
|
|
|
829 <td>16.4 bits(8)</td>
|
|
|
830 <td> 47<span class="sumN ">()</span></td>
|
|
|
831 <td>8/8(100%)</td>
|
|
|
832 <td>0/8(0%)</td>
|
|
|
833 <td>Plus/Plus</td>
|
|
|
834 <td class="aln_frame "></td>
|
|
|
835 </tr></tbody></table>
|
|
|
836 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
837 </div>
|
|
|
838 <div id="ar_557804451_2">
|
|
|
839 <pre>Query 5 CGTCGTGA 12
|
|
|
840 ||||||||
|
|
|
841 Sbjct 2591 CGTCGTGA 2598
|
|
|
842
|
|
|
843
|
|
|
844 </pre>
|
|
|
845 </div>
|
|
|
846 <div id="hd_557804451_3">
|
|
|
847 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
|
|
|
848 <span id="hsp557804451_3" class="alnParLinks">
|
|
|
849 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
850 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
851 <a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
|
|
|
852 </span>
|
|
|
853 </div>
|
|
|
854 <table class="alnParams">
|
|
|
855 <caption class="hdnHeader">Alignment statistics for match #3</caption>
|
|
|
856 <tbody><tr>
|
|
|
857 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
858 </tr>
|
|
|
859 <tr>
|
|
|
860 <td>14.4 bits(7)</td>
|
|
|
861 <td> 186<span class="sumN ">()</span></td>
|
|
|
862 <td>7/7(100%)</td>
|
|
|
863 <td>0/7(0%)</td>
|
|
|
864 <td>Plus/Plus</td>
|
|
|
865 <td class="aln_frame "></td>
|
|
|
866 </tr></tbody></table>
|
|
|
867 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
868 </div>
|
|
|
869 <div id="ar_557804451_3">
|
|
|
870 <pre>Query 7 TCGTGAA 13
|
|
|
871 |||||||
|
|
|
872 Sbjct 839 TCGTGAA 845
|
|
|
873
|
|
|
874
|
|
|
875 </pre>
|
|
|
876 </div>
|
|
|
877 <div id="hd_557804451_4">
|
|
|
878 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
|
|
|
879 <span id="hsp557804451_4" class="alnParLinks">
|
|
|
880 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
881 <a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
882 <a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a>
|
|
|
883 </span>
|
|
|
884 </div>
|
|
|
885 <table class="alnParams">
|
|
|
886 <caption class="hdnHeader">Alignment statistics for match #4</caption>
|
|
|
887 <tbody><tr>
|
|
|
888 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
889 </tr>
|
|
|
890 <tr>
|
|
|
891 <td>14.4 bits(7)</td>
|
|
|
892 <td> 186<span class="sumN ">()</span></td>
|
|
|
893 <td>7/7(100%)</td>
|
|
|
894 <td>0/7(0%)</td>
|
|
|
895 <td>Plus/Plus</td>
|
|
|
896 <td class="aln_frame "></td>
|
|
|
897 </tr></tbody></table>
|
|
|
898 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
899 </div>
|
|
|
900 <div id="ar_557804451_4">
|
|
|
901 <pre>Query 9 GTGAAGA 15
|
|
|
902 |||||||
|
|
|
903 Sbjct 2027 GTGAAGA 2033
|
|
|
904
|
|
|
905
|
|
|
906 </pre>
|
|
|
907 </div>
|
|
|
908 </div> <!-- alnAll_557804451 -->
|
|
|
909 </div> <!-- aln_557804451 -->
|
|
|
910 <div class="alnHdr cnf" id="alnHdr_557804395" seqid="557804395" accs="pdb|3J58|A">
|
|
|
911 <a name="557804395"></a>
|
|
|
912 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804395" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804395" title="Download information for pdb|3J58|A"><span>Download</span></a>
|
|
|
913 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804395" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
|
|
|
914 <div><input seqfsta="gi|557804395" name="dwn_557804395" checked="checked" id="dwFST_557804395" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804395">FASTA (complete sequence)</label></div>
|
|
|
915 <div><input seqfsta="gi|557804395" name="dwn_557804395" id="dwFSTAl_557804395" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804395">FASTA (aligned sequences)</label></div>
|
|
|
916 <div class=""><input name="dwn_557804395" id="dwGenBank_557804395" getgi="557804395" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804395">GenBank (complete sequence)</label></div>
|
|
|
917 <div>
|
|
|
918 <button class="cfg" id="dw_cont_557804395">Continue</button>
|
|
|
919 <button class="cfg cnc">Cancel</button>
|
|
|
920 </div>
|
|
|
921 </div> <!-- dsDownload -->
|
|
|
922 <span class="csLinks" id="csLinks_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics">Graphics</a></span>
|
|
|
923
|
|
|
924 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
|
|
|
925 <select id="sa_557804395" onchange="SortHSPAlnSel(event,this)">
|
|
|
926 <option selected="selected" value="0">E value</option>
|
|
|
927 <option value="1"> Score</option>
|
|
|
928 <option value="3">Percent identity</option>
|
|
|
929 <option value="2">Query start position</option>
|
|
|
930 <option value="4">Subject start position</option>
|
|
|
931 </select>
|
|
|
932 </div>
|
|
|
933 <span class="alnSeqLinks">
|
|
|
934 <a title="Go to next alignment for pdb|3J56|A" class="gbd toolsCtr navNext" ref="ordinalpos=2&currseq=557804395" id="alnNxt_557804395" onclick="goToNextAlign('dtr_557804395',true);"><span>Next</span></a>
|
|
|
935 <a title="Go to previous alignment for pdb|3J5A|A" class="gbd toolsCtr navPrev" ref="ordinalpos=2&currseq=557804395" id="alnPrv_557804395" onclick="goToNextAlign('dtr_557804395',false);"><span>Previous</span></a>
|
|
|
936 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J58|A" id="alnDsc_557804395" onclick="goToDefLine('dtr_557804395');" href="#dtr_557804395"><span>Descriptions</span></a>
|
|
|
937 </span>
|
|
|
938 </div>
|
|
|
939 <div class="oneSeqAln" id="aln_557804395">
|
|
|
940 <div id="dln_557804395">
|
|
|
941 <div class="dlfRow">
|
|
|
942 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)
|
|
|
943 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J58|A">pdb|3J58|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
|
|
|
944 </div>
|
|
|
945 </div>
|
|
|
946 <div class="relInf" id="relInf_557804395"><label>Related Information</label></div>
|
|
|
947 <!--
|
|
|
948 <pre>
|
|
|
949 <@aln_gene_info@>
|
|
|
950 </pre>
|
|
|
951 -->
|
|
|
952 <div class="alnAll" id="alnAll_557804395"><div id="hd_557804395_1">
|
|
|
953 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
|
|
|
954 <span id="hsp557804395_1" class="alnParLinks">
|
|
|
955 <a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
956 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
957 <a class="gbd toolsCtr navBack hidden" href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
|
|
|
958 </span>
|
|
|
959 </div>
|
|
|
960 <table class="alnParams">
|
|
|
961 <caption class="hdnHeader">Alignment statistics for match #1</caption>
|
|
|
962 <tbody><tr>
|
|
|
963 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
964 </tr>
|
|
|
965 <tr>
|
|
|
966 <td>32.2 bits(16)</td>
|
|
|
967 <td>8e-04<span class="sumN ">()</span></td>
|
|
|
968 <td>16/16(100%)</td>
|
|
|
969 <td>0/16(0%)</td>
|
|
|
970 <td>Plus/Plus</td>
|
|
|
971 <td class="aln_frame "></td>
|
|
|
972 </tr></tbody></table>
|
|
|
973 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
974 </div>
|
|
|
975 <div id="ar_557804395_1">
|
|
|
976 <pre>Query 1 CGTCCGTCGTGAAGAG 16
|
|
|
977 ||||||||||||||||
|
|
|
978 Sbjct 961 CGTCCGTCGTGAAGAG 976
|
|
|
979
|
|
|
980
|
|
|
981 </pre>
|
|
|
982 </div>
|
|
|
983 <div id="hd_557804395_2">
|
|
|
984 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
|
|
|
985 <span id="hsp557804395_2" class="alnParLinks">
|
|
|
986 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
987 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
988 <a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
|
|
|
989 </span>
|
|
|
990 </div>
|
|
|
991 <table class="alnParams">
|
|
|
992 <caption class="hdnHeader">Alignment statistics for match #2</caption>
|
|
|
993 <tbody><tr>
|
|
|
994 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
995 </tr>
|
|
|
996 <tr>
|
|
|
997 <td>16.4 bits(8)</td>
|
|
|
998 <td> 47<span class="sumN ">()</span></td>
|
|
|
999 <td>8/8(100%)</td>
|
|
|
1000 <td>0/8(0%)</td>
|
|
|
1001 <td>Plus/Plus</td>
|
|
|
1002 <td class="aln_frame "></td>
|
|
|
1003 </tr></tbody></table>
|
|
|
1004 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1005 </div>
|
|
|
1006 <div id="ar_557804395_2">
|
|
|
1007 <pre>Query 5 CGTCGTGA 12
|
|
|
1008 ||||||||
|
|
|
1009 Sbjct 2591 CGTCGTGA 2598
|
|
|
1010
|
|
|
1011
|
|
|
1012 </pre>
|
|
|
1013 </div>
|
|
|
1014 <div id="hd_557804395_3">
|
|
|
1015 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
|
|
|
1016 <span id="hsp557804395_3" class="alnParLinks">
|
|
|
1017 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1018 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1019 <a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
|
|
|
1020 </span>
|
|
|
1021 </div>
|
|
|
1022 <table class="alnParams">
|
|
|
1023 <caption class="hdnHeader">Alignment statistics for match #3</caption>
|
|
|
1024 <tbody><tr>
|
|
|
1025 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1026 </tr>
|
|
|
1027 <tr>
|
|
|
1028 <td>14.4 bits(7)</td>
|
|
|
1029 <td> 186<span class="sumN ">()</span></td>
|
|
|
1030 <td>7/7(100%)</td>
|
|
|
1031 <td>0/7(0%)</td>
|
|
|
1032 <td>Plus/Plus</td>
|
|
|
1033 <td class="aln_frame "></td>
|
|
|
1034 </tr></tbody></table>
|
|
|
1035 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1036 </div>
|
|
|
1037 <div id="ar_557804395_3">
|
|
|
1038 <pre>Query 7 TCGTGAA 13
|
|
|
1039 |||||||
|
|
|
1040 Sbjct 839 TCGTGAA 845
|
|
|
1041
|
|
|
1042
|
|
|
1043 </pre>
|
|
|
1044 </div>
|
|
|
1045 <div id="hd_557804395_4">
|
|
|
1046 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
|
|
|
1047 <span id="hsp557804395_4" class="alnParLinks">
|
|
|
1048 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1049 <a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1050 <a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a>
|
|
|
1051 </span>
|
|
|
1052 </div>
|
|
|
1053 <table class="alnParams">
|
|
|
1054 <caption class="hdnHeader">Alignment statistics for match #4</caption>
|
|
|
1055 <tbody><tr>
|
|
|
1056 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1057 </tr>
|
|
|
1058 <tr>
|
|
|
1059 <td>14.4 bits(7)</td>
|
|
|
1060 <td> 186<span class="sumN ">()</span></td>
|
|
|
1061 <td>7/7(100%)</td>
|
|
|
1062 <td>0/7(0%)</td>
|
|
|
1063 <td>Plus/Plus</td>
|
|
|
1064 <td class="aln_frame "></td>
|
|
|
1065 </tr></tbody></table>
|
|
|
1066 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1067 </div>
|
|
|
1068 <div id="ar_557804395_4">
|
|
|
1069 <pre>Query 9 GTGAAGA 15
|
|
|
1070 |||||||
|
|
|
1071 Sbjct 2027 GTGAAGA 2033
|
|
|
1072
|
|
|
1073
|
|
|
1074 </pre>
|
|
|
1075 </div>
|
|
|
1076 </div> <!-- alnAll_557804395 -->
|
|
|
1077 </div> <!-- aln_557804395 -->
|
|
|
1078 <div class="alnHdr cnf" id="alnHdr_557804339" seqid="557804339" accs="pdb|3J56|A">
|
|
|
1079 <a name="557804339"></a>
|
|
|
1080 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804339" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804339" title="Download information for pdb|3J56|A"><span>Download</span></a>
|
|
|
1081 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804339" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
|
|
|
1082 <div><input seqfsta="gi|557804339" name="dwn_557804339" checked="checked" id="dwFST_557804339" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804339">FASTA (complete sequence)</label></div>
|
|
|
1083 <div><input seqfsta="gi|557804339" name="dwn_557804339" id="dwFSTAl_557804339" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804339">FASTA (aligned sequences)</label></div>
|
|
|
1084 <div class=""><input name="dwn_557804339" id="dwGenBank_557804339" getgi="557804339" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804339">GenBank (complete sequence)</label></div>
|
|
|
1085 <div>
|
|
|
1086 <button class="cfg" id="dw_cont_557804339">Continue</button>
|
|
|
1087 <button class="cfg cnc">Cancel</button>
|
|
|
1088 </div>
|
|
|
1089 </div> <!-- dsDownload -->
|
|
|
1090 <span class="csLinks" id="csLinks_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics">Graphics</a></span>
|
|
|
1091
|
|
|
1092 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
|
|
|
1093 <select id="sa_557804339" onchange="SortHSPAlnSel(event,this)">
|
|
|
1094 <option selected="selected" value="0">E value</option>
|
|
|
1095 <option value="1"> Score</option>
|
|
|
1096 <option value="3">Percent identity</option>
|
|
|
1097 <option value="2">Query start position</option>
|
|
|
1098 <option value="4">Subject start position</option>
|
|
|
1099 </select>
|
|
|
1100 </div>
|
|
|
1101 <span class="alnSeqLinks">
|
|
|
1102 <a title="Go to next alignment for pdb|3J54|A" class="gbd toolsCtr navNext" ref="ordinalpos=3&currseq=557804339" id="alnNxt_557804339" onclick="goToNextAlign('dtr_557804339',true);"><span>Next</span></a>
|
|
|
1103 <a title="Go to previous alignment for pdb|3J58|A" class="gbd toolsCtr navPrev" ref="ordinalpos=3&currseq=557804339" id="alnPrv_557804339" onclick="goToNextAlign('dtr_557804339',false);"><span>Previous</span></a>
|
|
|
1104 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J56|A" id="alnDsc_557804339" onclick="goToDefLine('dtr_557804339');" href="#dtr_557804339"><span>Descriptions</span></a>
|
|
|
1105 </span>
|
|
|
1106 </div>
|
|
|
1107 <div class="oneSeqAln" id="aln_557804339">
|
|
|
1108 <div id="dln_557804339">
|
|
|
1109 <div class="dlfRow">
|
|
|
1110 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)
|
|
|
1111 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J56|A">pdb|3J56|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
|
|
|
1112 </div>
|
|
|
1113 </div>
|
|
|
1114 <div class="relInf" id="relInf_557804339"><label>Related Information</label></div>
|
|
|
1115 <!--
|
|
|
1116 <pre>
|
|
|
1117 <@aln_gene_info@>
|
|
|
1118 </pre>
|
|
|
1119 -->
|
|
|
1120 <div class="alnAll" id="alnAll_557804339"><div id="hd_557804339_1">
|
|
|
1121 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
|
|
|
1122 <span id="hsp557804339_1" class="alnParLinks">
|
|
|
1123 <a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1124 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1125 <a class="gbd toolsCtr navBack hidden" href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
|
|
|
1126 </span>
|
|
|
1127 </div>
|
|
|
1128 <table class="alnParams">
|
|
|
1129 <caption class="hdnHeader">Alignment statistics for match #1</caption>
|
|
|
1130 <tbody><tr>
|
|
|
1131 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1132 </tr>
|
|
|
1133 <tr>
|
|
|
1134 <td>32.2 bits(16)</td>
|
|
|
1135 <td>8e-04<span class="sumN ">()</span></td>
|
|
|
1136 <td>16/16(100%)</td>
|
|
|
1137 <td>0/16(0%)</td>
|
|
|
1138 <td>Plus/Plus</td>
|
|
|
1139 <td class="aln_frame "></td>
|
|
|
1140 </tr></tbody></table>
|
|
|
1141 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1142 </div>
|
|
|
1143 <div id="ar_557804339_1">
|
|
|
1144 <pre>Query 1 CGTCCGTCGTGAAGAG 16
|
|
|
1145 ||||||||||||||||
|
|
|
1146 Sbjct 961 CGTCCGTCGTGAAGAG 976
|
|
|
1147
|
|
|
1148
|
|
|
1149 </pre>
|
|
|
1150 </div>
|
|
|
1151 <div id="hd_557804339_2">
|
|
|
1152 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
|
|
|
1153 <span id="hsp557804339_2" class="alnParLinks">
|
|
|
1154 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1155 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1156 <a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
|
|
|
1157 </span>
|
|
|
1158 </div>
|
|
|
1159 <table class="alnParams">
|
|
|
1160 <caption class="hdnHeader">Alignment statistics for match #2</caption>
|
|
|
1161 <tbody><tr>
|
|
|
1162 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1163 </tr>
|
|
|
1164 <tr>
|
|
|
1165 <td>16.4 bits(8)</td>
|
|
|
1166 <td> 47<span class="sumN ">()</span></td>
|
|
|
1167 <td>8/8(100%)</td>
|
|
|
1168 <td>0/8(0%)</td>
|
|
|
1169 <td>Plus/Plus</td>
|
|
|
1170 <td class="aln_frame "></td>
|
|
|
1171 </tr></tbody></table>
|
|
|
1172 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1173 </div>
|
|
|
1174 <div id="ar_557804339_2">
|
|
|
1175 <pre>Query 5 CGTCGTGA 12
|
|
|
1176 ||||||||
|
|
|
1177 Sbjct 2591 CGTCGTGA 2598
|
|
|
1178
|
|
|
1179
|
|
|
1180 </pre>
|
|
|
1181 </div>
|
|
|
1182 <div id="hd_557804339_3">
|
|
|
1183 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
|
|
|
1184 <span id="hsp557804339_3" class="alnParLinks">
|
|
|
1185 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1186 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1187 <a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
|
|
|
1188 </span>
|
|
|
1189 </div>
|
|
|
1190 <table class="alnParams">
|
|
|
1191 <caption class="hdnHeader">Alignment statistics for match #3</caption>
|
|
|
1192 <tbody><tr>
|
|
|
1193 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1194 </tr>
|
|
|
1195 <tr>
|
|
|
1196 <td>14.4 bits(7)</td>
|
|
|
1197 <td> 186<span class="sumN ">()</span></td>
|
|
|
1198 <td>7/7(100%)</td>
|
|
|
1199 <td>0/7(0%)</td>
|
|
|
1200 <td>Plus/Plus</td>
|
|
|
1201 <td class="aln_frame "></td>
|
|
|
1202 </tr></tbody></table>
|
|
|
1203 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1204 </div>
|
|
|
1205 <div id="ar_557804339_3">
|
|
|
1206 <pre>Query 7 TCGTGAA 13
|
|
|
1207 |||||||
|
|
|
1208 Sbjct 839 TCGTGAA 845
|
|
|
1209
|
|
|
1210
|
|
|
1211 </pre>
|
|
|
1212 </div>
|
|
|
1213 <div id="hd_557804339_4">
|
|
|
1214 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
|
|
|
1215 <span id="hsp557804339_4" class="alnParLinks">
|
|
|
1216 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1217 <a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1218 <a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a>
|
|
|
1219 </span>
|
|
|
1220 </div>
|
|
|
1221 <table class="alnParams">
|
|
|
1222 <caption class="hdnHeader">Alignment statistics for match #4</caption>
|
|
|
1223 <tbody><tr>
|
|
|
1224 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1225 </tr>
|
|
|
1226 <tr>
|
|
|
1227 <td>14.4 bits(7)</td>
|
|
|
1228 <td> 186<span class="sumN ">()</span></td>
|
|
|
1229 <td>7/7(100%)</td>
|
|
|
1230 <td>0/7(0%)</td>
|
|
|
1231 <td>Plus/Plus</td>
|
|
|
1232 <td class="aln_frame "></td>
|
|
|
1233 </tr></tbody></table>
|
|
|
1234 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1235 </div>
|
|
|
1236 <div id="ar_557804339_4">
|
|
|
1237 <pre>Query 9 GTGAAGA 15
|
|
|
1238 |||||||
|
|
|
1239 Sbjct 2027 GTGAAGA 2033
|
|
|
1240
|
|
|
1241
|
|
|
1242 </pre>
|
|
|
1243 </div>
|
|
|
1244 </div> <!-- alnAll_557804339 -->
|
|
|
1245 </div> <!-- aln_557804339 -->
|
|
|
1246 <div class="alnHdr cnf" id="alnHdr_557804283" seqid="557804283" accs="pdb|3J54|A">
|
|
|
1247 <a name="557804283"></a>
|
|
|
1248 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804283" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804283" title="Download information for pdb|3J54|A"><span>Download</span></a>
|
|
|
1249 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804283" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
|
|
|
1250 <div><input seqfsta="gi|557804283" name="dwn_557804283" checked="checked" id="dwFST_557804283" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804283">FASTA (complete sequence)</label></div>
|
|
|
1251 <div><input seqfsta="gi|557804283" name="dwn_557804283" id="dwFSTAl_557804283" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804283">FASTA (aligned sequences)</label></div>
|
|
|
1252 <div class=""><input name="dwn_557804283" id="dwGenBank_557804283" getgi="557804283" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804283">GenBank (complete sequence)</label></div>
|
|
|
1253 <div>
|
|
|
1254 <button class="cfg" id="dw_cont_557804283">Continue</button>
|
|
|
1255 <button class="cfg cnc">Cancel</button>
|
|
|
1256 </div>
|
|
|
1257 </div> <!-- dsDownload -->
|
|
|
1258 <span class="csLinks" id="csLinks_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics">Graphics</a></span>
|
|
|
1259
|
|
|
1260 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
|
|
|
1261 <select id="sa_557804283" onchange="SortHSPAlnSel(event,this)">
|
|
|
1262 <option selected="selected" value="0">E value</option>
|
|
|
1263 <option value="1"> Score</option>
|
|
|
1264 <option value="3">Percent identity</option>
|
|
|
1265 <option value="2">Query start position</option>
|
|
|
1266 <option value="4">Subject start position</option>
|
|
|
1267 </select>
|
|
|
1268 </div>
|
|
|
1269 <span class="alnSeqLinks">
|
|
|
1270 <a title="Go to next alignment for pdb|3J52|A" class="gbd toolsCtr navNext" ref="ordinalpos=4&currseq=557804283" id="alnNxt_557804283" onclick="goToNextAlign('dtr_557804283',true);"><span>Next</span></a>
|
|
|
1271 <a title="Go to previous alignment for pdb|3J56|A" class="gbd toolsCtr navPrev" ref="ordinalpos=4&currseq=557804283" id="alnPrv_557804283" onclick="goToNextAlign('dtr_557804283',false);"><span>Previous</span></a>
|
|
|
1272 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J54|A" id="alnDsc_557804283" onclick="goToDefLine('dtr_557804283');" href="#dtr_557804283"><span>Descriptions</span></a>
|
|
|
1273 </span>
|
|
|
1274 </div>
|
|
|
1275 <div class="oneSeqAln" id="aln_557804283">
|
|
|
1276 <div id="dln_557804283">
|
|
|
1277 <div class="dlfRow">
|
|
|
1278 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)
|
|
|
1279 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J54|A">pdb|3J54|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
|
|
|
1280 </div>
|
|
|
1281 </div>
|
|
|
1282 <div class="relInf" id="relInf_557804283"><label>Related Information</label></div>
|
|
|
1283 <!--
|
|
|
1284 <pre>
|
|
|
1285 <@aln_gene_info@>
|
|
|
1286 </pre>
|
|
|
1287 -->
|
|
|
1288 <div class="alnAll" id="alnAll_557804283"><div id="hd_557804283_1">
|
|
|
1289 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
|
|
|
1290 <span id="hsp557804283_1" class="alnParLinks">
|
|
|
1291 <a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1292 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1293 <a class="gbd toolsCtr navBack hidden" href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
|
|
|
1294 </span>
|
|
|
1295 </div>
|
|
|
1296 <table class="alnParams">
|
|
|
1297 <caption class="hdnHeader">Alignment statistics for match #1</caption>
|
|
|
1298 <tbody><tr>
|
|
|
1299 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1300 </tr>
|
|
|
1301 <tr>
|
|
|
1302 <td>32.2 bits(16)</td>
|
|
|
1303 <td>8e-04<span class="sumN ">()</span></td>
|
|
|
1304 <td>16/16(100%)</td>
|
|
|
1305 <td>0/16(0%)</td>
|
|
|
1306 <td>Plus/Plus</td>
|
|
|
1307 <td class="aln_frame "></td>
|
|
|
1308 </tr></tbody></table>
|
|
|
1309 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1310 </div>
|
|
|
1311 <div id="ar_557804283_1">
|
|
|
1312 <pre>Query 1 CGTCCGTCGTGAAGAG 16
|
|
|
1313 ||||||||||||||||
|
|
|
1314 Sbjct 961 CGTCCGTCGTGAAGAG 976
|
|
|
1315
|
|
|
1316
|
|
|
1317 </pre>
|
|
|
1318 </div>
|
|
|
1319 <div id="hd_557804283_2">
|
|
|
1320 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
|
|
|
1321 <span id="hsp557804283_2" class="alnParLinks">
|
|
|
1322 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1323 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1324 <a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
|
|
|
1325 </span>
|
|
|
1326 </div>
|
|
|
1327 <table class="alnParams">
|
|
|
1328 <caption class="hdnHeader">Alignment statistics for match #2</caption>
|
|
|
1329 <tbody><tr>
|
|
|
1330 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1331 </tr>
|
|
|
1332 <tr>
|
|
|
1333 <td>16.4 bits(8)</td>
|
|
|
1334 <td> 47<span class="sumN ">()</span></td>
|
|
|
1335 <td>8/8(100%)</td>
|
|
|
1336 <td>0/8(0%)</td>
|
|
|
1337 <td>Plus/Plus</td>
|
|
|
1338 <td class="aln_frame "></td>
|
|
|
1339 </tr></tbody></table>
|
|
|
1340 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1341 </div>
|
|
|
1342 <div id="ar_557804283_2">
|
|
|
1343 <pre>Query 5 CGTCGTGA 12
|
|
|
1344 ||||||||
|
|
|
1345 Sbjct 2591 CGTCGTGA 2598
|
|
|
1346
|
|
|
1347
|
|
|
1348 </pre>
|
|
|
1349 </div>
|
|
|
1350 <div id="hd_557804283_3">
|
|
|
1351 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
|
|
|
1352 <span id="hsp557804283_3" class="alnParLinks">
|
|
|
1353 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1354 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1355 <a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
|
|
|
1356 </span>
|
|
|
1357 </div>
|
|
|
1358 <table class="alnParams">
|
|
|
1359 <caption class="hdnHeader">Alignment statistics for match #3</caption>
|
|
|
1360 <tbody><tr>
|
|
|
1361 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1362 </tr>
|
|
|
1363 <tr>
|
|
|
1364 <td>14.4 bits(7)</td>
|
|
|
1365 <td> 186<span class="sumN ">()</span></td>
|
|
|
1366 <td>7/7(100%)</td>
|
|
|
1367 <td>0/7(0%)</td>
|
|
|
1368 <td>Plus/Plus</td>
|
|
|
1369 <td class="aln_frame "></td>
|
|
|
1370 </tr></tbody></table>
|
|
|
1371 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1372 </div>
|
|
|
1373 <div id="ar_557804283_3">
|
|
|
1374 <pre>Query 7 TCGTGAA 13
|
|
|
1375 |||||||
|
|
|
1376 Sbjct 839 TCGTGAA 845
|
|
|
1377
|
|
|
1378
|
|
|
1379 </pre>
|
|
|
1380 </div>
|
|
|
1381 <div id="hd_557804283_4">
|
|
|
1382 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
|
|
|
1383 <span id="hsp557804283_4" class="alnParLinks">
|
|
|
1384 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1385 <a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1386 <a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a>
|
|
|
1387 </span>
|
|
|
1388 </div>
|
|
|
1389 <table class="alnParams">
|
|
|
1390 <caption class="hdnHeader">Alignment statistics for match #4</caption>
|
|
|
1391 <tbody><tr>
|
|
|
1392 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1393 </tr>
|
|
|
1394 <tr>
|
|
|
1395 <td>14.4 bits(7)</td>
|
|
|
1396 <td> 186<span class="sumN ">()</span></td>
|
|
|
1397 <td>7/7(100%)</td>
|
|
|
1398 <td>0/7(0%)</td>
|
|
|
1399 <td>Plus/Plus</td>
|
|
|
1400 <td class="aln_frame "></td>
|
|
|
1401 </tr></tbody></table>
|
|
|
1402 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1403 </div>
|
|
|
1404 <div id="ar_557804283_4">
|
|
|
1405 <pre>Query 9 GTGAAGA 15
|
|
|
1406 |||||||
|
|
|
1407 Sbjct 2027 GTGAAGA 2033
|
|
|
1408
|
|
|
1409
|
|
|
1410 </pre>
|
|
|
1411 </div>
|
|
|
1412 </div> <!-- alnAll_557804283 -->
|
|
|
1413 </div> <!-- aln_557804283 -->
|
|
|
1414 <div class="alnHdr cnf" id="alnHdr_557804227" seqid="557804227" accs="pdb|3J52|A">
|
|
|
1415 <a name="557804227"></a>
|
|
|
1416 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804227" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804227" title="Download information for pdb|3J52|A"><span>Download</span></a>
|
|
|
1417 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804227" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
|
|
|
1418 <div><input seqfsta="gi|557804227" name="dwn_557804227" checked="checked" id="dwFST_557804227" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804227">FASTA (complete sequence)</label></div>
|
|
|
1419 <div><input seqfsta="gi|557804227" name="dwn_557804227" id="dwFSTAl_557804227" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804227">FASTA (aligned sequences)</label></div>
|
|
|
1420 <div class=""><input name="dwn_557804227" id="dwGenBank_557804227" getgi="557804227" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804227">GenBank (complete sequence)</label></div>
|
|
|
1421 <div>
|
|
|
1422 <button class="cfg" id="dw_cont_557804227">Continue</button>
|
|
|
1423 <button class="cfg cnc">Cancel</button>
|
|
|
1424 </div>
|
|
|
1425 </div> <!-- dsDownload -->
|
|
|
1426 <span class="csLinks" id="csLinks_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics">Graphics</a></span>
|
|
|
1427
|
|
|
1428 <div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label>
|
|
|
1429 <select id="sa_557804227" onchange="SortHSPAlnSel(event,this)">
|
|
|
1430 <option selected="selected" value="0">E value</option>
|
|
|
1431 <option value="1"> Score</option>
|
|
|
1432 <option value="3">Percent identity</option>
|
|
|
1433 <option value="2">Query start position</option>
|
|
|
1434 <option value="4">Subject start position</option>
|
|
|
1435 </select>
|
|
|
1436 </div>
|
|
|
1437 <span class="alnSeqLinks">
|
|
|
1438 <a title="Go to next alignment for pdb|3J51|A" class="gbd toolsCtr navNext" ref="ordinalpos=5&currseq=557804227" id="alnNxt_557804227" onclick="goToNextAlign('dtr_557804227',true);"><span>Next</span></a>
|
|
|
1439 <a title="Go to previous alignment for pdb|3J54|A" class="gbd toolsCtr navPrev" ref="ordinalpos=5&currseq=557804227" id="alnPrv_557804227" onclick="goToNextAlign('dtr_557804227',false);"><span>Previous</span></a>
|
|
|
1440 <a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J52|A" id="alnDsc_557804227" onclick="goToDefLine('dtr_557804227');" href="#dtr_557804227"><span>Descriptions</span></a>
|
|
|
1441 </span>
|
|
|
1442 </div>
|
|
|
1443 <div class="oneSeqAln" id="aln_557804227">
|
|
|
1444 <div id="dln_557804227">
|
|
|
1445 <div class="dlfRow">
|
|
|
1446 Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)
|
|
|
1447 <div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J52|A">pdb|3J52|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div>
|
|
|
1448 </div>
|
|
|
1449 </div>
|
|
|
1450 <div class="relInf" id="relInf_557804227"><label>Related Information</label></div>
|
|
|
1451 <!--
|
|
|
1452 <pre>
|
|
|
1453 <@aln_gene_info@>
|
|
|
1454 </pre>
|
|
|
1455 -->
|
|
|
1456 <div class="alnAll" id="alnAll_557804227"><div id="hd_557804227_1">
|
|
|
1457 <div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span>
|
|
|
1458 <span id="hsp557804227_1" class="alnParLinks">
|
|
|
1459 <a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1460 <a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1461 <a class="gbd toolsCtr navBack hidden" href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
|
|
|
1462 </span>
|
|
|
1463 </div>
|
|
|
1464 <table class="alnParams">
|
|
|
1465 <caption class="hdnHeader">Alignment statistics for match #1</caption>
|
|
|
1466 <tbody><tr>
|
|
|
1467 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1468 </tr>
|
|
|
1469 <tr>
|
|
|
1470 <td>32.2 bits(16)</td>
|
|
|
1471 <td>8e-04<span class="sumN ">()</span></td>
|
|
|
1472 <td>16/16(100%)</td>
|
|
|
1473 <td>0/16(0%)</td>
|
|
|
1474 <td>Plus/Plus</td>
|
|
|
1475 <td class="aln_frame "></td>
|
|
|
1476 </tr></tbody></table>
|
|
|
1477 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1478 </div>
|
|
|
1479 <div id="ar_557804227_1">
|
|
|
1480 <pre>Query 1 CGTCCGTCGTGAAGAG 16
|
|
|
1481 ||||||||||||||||
|
|
|
1482 Sbjct 961 CGTCCGTCGTGAAGAG 976
|
|
|
1483
|
|
|
1484
|
|
|
1485 </pre>
|
|
|
1486 </div>
|
|
|
1487 <div id="hd_557804227_2">
|
|
|
1488 <div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span>
|
|
|
1489 <span id="hsp557804227_2" class="alnParLinks">
|
|
|
1490 <a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1491 <a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1492 <a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
|
|
|
1493 </span>
|
|
|
1494 </div>
|
|
|
1495 <table class="alnParams">
|
|
|
1496 <caption class="hdnHeader">Alignment statistics for match #2</caption>
|
|
|
1497 <tbody><tr>
|
|
|
1498 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1499 </tr>
|
|
|
1500 <tr>
|
|
|
1501 <td>16.4 bits(8)</td>
|
|
|
1502 <td> 47<span class="sumN ">()</span></td>
|
|
|
1503 <td>8/8(100%)</td>
|
|
|
1504 <td>0/8(0%)</td>
|
|
|
1505 <td>Plus/Plus</td>
|
|
|
1506 <td class="aln_frame "></td>
|
|
|
1507 </tr></tbody></table>
|
|
|
1508 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1509 </div>
|
|
|
1510 <div id="ar_557804227_2">
|
|
|
1511 <pre>Query 5 CGTCGTGA 12
|
|
|
1512 ||||||||
|
|
|
1513 Sbjct 2591 CGTCGTGA 2598
|
|
|
1514
|
|
|
1515
|
|
|
1516 </pre>
|
|
|
1517 </div>
|
|
|
1518 <div id="hd_557804227_3">
|
|
|
1519 <div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span>
|
|
|
1520 <span id="hsp557804227_3" class="alnParLinks">
|
|
|
1521 <a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1522 <a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1523 <a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
|
|
|
1524 </span>
|
|
|
1525 </div>
|
|
|
1526 <table class="alnParams">
|
|
|
1527 <caption class="hdnHeader">Alignment statistics for match #3</caption>
|
|
|
1528 <tbody><tr>
|
|
|
1529 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1530 </tr>
|
|
|
1531 <tr>
|
|
|
1532 <td>14.4 bits(7)</td>
|
|
|
1533 <td> 186<span class="sumN ">()</span></td>
|
|
|
1534 <td>7/7(100%)</td>
|
|
|
1535 <td>0/7(0%)</td>
|
|
|
1536 <td>Plus/Plus</td>
|
|
|
1537 <td class="aln_frame "></td>
|
|
|
1538 </tr></tbody></table>
|
|
|
1539 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1540 </div>
|
|
|
1541 <div id="ar_557804227_3">
|
|
|
1542 <pre>Query 7 TCGTGAA 13
|
|
|
1543 |||||||
|
|
|
1544 Sbjct 839 TCGTGAA 845
|
|
|
1545
|
|
|
1546
|
|
|
1547 </pre>
|
|
|
1548 </div>
|
|
|
1549 <div id="hd_557804227_4">
|
|
|
1550 <div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span>
|
|
|
1551 <span id="hsp557804227_4" class="alnParLinks">
|
|
|
1552 <a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a>
|
|
|
1553 <a init="on" class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a>
|
|
|
1554 <a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a>
|
|
|
1555 </span>
|
|
|
1556 </div>
|
|
|
1557 <table class="alnParams">
|
|
|
1558 <caption class="hdnHeader">Alignment statistics for match #4</caption>
|
|
|
1559 <tbody><tr>
|
|
|
1560 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th>
|
|
|
1561 </tr>
|
|
|
1562 <tr>
|
|
|
1563 <td>14.4 bits(7)</td>
|
|
|
1564 <td> 186<span class="sumN ">()</span></td>
|
|
|
1565 <td>7/7(100%)</td>
|
|
|
1566 <td>0/7(0%)</td>
|
|
|
1567 <td>Plus/Plus</td>
|
|
|
1568 <td class="aln_frame "></td>
|
|
|
1569 </tr></tbody></table>
|
|
|
1570 <div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div>
|
|
|
1571 </div>
|
|
|
1572 <div id="ar_557804227_4">
|
|
|
1573 <pre>Query 9 GTGAAGA 15
|
|
|
1574 |||||||
|
|
|
1575 Sbjct 2027 GTGAAGA 2033
|
|
|
1576
|
|
|
1577
|
|
|
1578 </pre>
|
|
|
1579 </div>
|
|
|
1580 </div> <!-- alnAll_557804227 -->
|
|
|
1581 </div> <!-- aln_557804227 -->
|
|
|
1582 </form>
|
|
|
1583
|
|
|
1584 </div></div>
|
|
|
1585 <pre></pre>
|
|
|
1586 </div><!--/#alignments-->
|
|
|
1587 </div><!-- alignInfo -->
|
|
|
1588 </div><!--ARIA-->
|
|
|
1589
|
|
|
1590 </div><!-- alignView -->
|
|
|
1591
|
|
|
1592 </div><!-- /#content -->
|
|
|
1593
|
|
|
1594
|
|
|
1595
|
|
|
1596
|
|
|
1597
|
|
|
1598 </div><!-- /#content-wrap -->
|
|
|
1599
|
|
|
1600
|
|
|
1601
|
|
|
1602 </div><!--/#wrap-->
|
|
|
1603
|
|
|
1604 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/utils.js"></script>
|
|
|
1605 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/toggle.js"></script>
|
|
|
1606 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/remote_data_provider.js"></script>
|
|
|
1607 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/results.js"></script><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/firefox-descriptions.css" media="screen"><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/firefox-descriptions_002.css" media="screen">
|
|
|
1608 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/blast.js"></script>
|
|
|
1609 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/format.js"></script>
|
|
|
1610 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/formatRes.js"></script>
|
|
|
1611 <script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/InstrumentPageStarterJS.js"></script>
|
|
|
1612
|
|
|
1613
|
|
|
1614
|
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