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comparison test-data/blast xml example2.xml @ 29:420d0508dcd6

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reorganise to match galaxy tool shed layout
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 15 May 2014 16:50:38 +0200
parents example_xmls/blast xml example2.xml@b77934f57522
children
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28:8a8c0c71b5d1 29:420d0508dcd6
1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
3 <BlastOutput>
4 <BlastOutput_program>blastn</BlastOutput_program>
5 <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version>
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db>/share/BlastDB/nt</BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>No definition line</BlastOutput_query-def>
10 <BlastOutput_query-len>16</BlastOutput_query-len>
11 <BlastOutput_param>
12 <Parameters>
13 <Parameters_expect>0.001</Parameters_expect>
14 <Parameters_sc-match>2</Parameters_sc-match>
15 <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
16 <Parameters_gap-open>5</Parameters_gap-open>
17 <Parameters_gap-extend>2</Parameters_gap-extend>
18 <Parameters_filter>L;m;</Parameters_filter>
19 </Parameters>
20 </BlastOutput_param>
21 <BlastOutput_iterations>
22 <Iteration>
23 <Iteration_iter-num>1</Iteration_iter-num>
24 <Iteration_query-ID>Query_1</Iteration_query-ID>
25 <Iteration_query-def>No definition line</Iteration_query-def>
26 <Iteration_query-len>16</Iteration_query-len>
27 <Iteration_hits>
28 </Iteration_hits>
29 <Iteration_stat>
30 <Statistics>
31 <Statistics_db-num>28813188</Statistics_db-num>
32 <Statistics_db-len>53027764389</Statistics_db-len>
33 <Statistics_hsp-len>13</Statistics_hsp-len>
34 <Statistics_eff-space>157959578835</Statistics_eff-space>
35 <Statistics_kappa>0.41</Statistics_kappa>
36 <Statistics_lambda>0.625</Statistics_lambda>
37 <Statistics_entropy>0.78</Statistics_entropy>
38 </Statistics>
39 </Iteration_stat>
40 <Iteration_message>No hits found</Iteration_message>
41 </Iteration>
42 </BlastOutput_iterations>
43 </BlastOutput>
44