Mercurial > repos > jankanis > blast2html
diff test-data/blast xml example2.xml @ 29:420d0508dcd6
reorganise to match galaxy tool shed layout
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Thu, 15 May 2014 16:50:38 +0200 |
| parents | example_xmls/blast xml example2.xml@b77934f57522 |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blast xml example2.xml Thu May 15 16:50:38 2014 +0200 @@ -0,0 +1,44 @@ +<?xml version="1.0"?> +<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> +<BlastOutput> + <BlastOutput_program>blastn</BlastOutput_program> + <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version> + <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> + <BlastOutput_db>/share/BlastDB/nt</BlastOutput_db> + <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> + <BlastOutput_query-def>No definition line</BlastOutput_query-def> + <BlastOutput_query-len>16</BlastOutput_query-len> + <BlastOutput_param> + <Parameters> + <Parameters_expect>0.001</Parameters_expect> + <Parameters_sc-match>2</Parameters_sc-match> + <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> + <Parameters_gap-open>5</Parameters_gap-open> + <Parameters_gap-extend>2</Parameters_gap-extend> + <Parameters_filter>L;m;</Parameters_filter> + </Parameters> + </BlastOutput_param> +<BlastOutput_iterations> +<Iteration> + <Iteration_iter-num>1</Iteration_iter-num> + <Iteration_query-ID>Query_1</Iteration_query-ID> + <Iteration_query-def>No definition line</Iteration_query-def> + <Iteration_query-len>16</Iteration_query-len> +<Iteration_hits> +</Iteration_hits> + <Iteration_stat> + <Statistics> + <Statistics_db-num>28813188</Statistics_db-num> + <Statistics_db-len>53027764389</Statistics_db-len> + <Statistics_hsp-len>13</Statistics_hsp-len> + <Statistics_eff-space>157959578835</Statistics_eff-space> + <Statistics_kappa>0.41</Statistics_kappa> + <Statistics_lambda>0.625</Statistics_lambda> + <Statistics_entropy>0.78</Statistics_entropy> + </Statistics> + </Iteration_stat> + <Iteration_message>No hits found</Iteration_message> +</Iteration> +</BlastOutput_iterations> +</BlastOutput> +