Mercurial > repos > jankanis > blast2html
diff Blast output page example trimmed.html @ 1:ffe82516a83c
add trimmed down html example
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Tue, 06 May 2014 17:36:10 +0200 |
| parents | |
| children | f6cd51710678 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Blast output page example trimmed.html Tue May 06 17:36:10 2014 +0200 @@ -0,0 +1,1615 @@ +<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> +<html xmlns="http://www.w3.org/1999/xhtml"><head> + +<meta http-equiv="Content-Type" content="text/html; charset=UTF-8"> +<meta http-equiv="X-UA-Compatible" content="IE=edge,chrome=1"> +<meta name="jig" content="ncbitoggler ncbiautocomplete ncbilocalnav ncbigrid ncbipopper"> +<meta name="ncbitoggler" content="animation:'none'"> +<meta name="ncbipopper" content="animation:'none',closeEvent: 'click',openEvent: 'click',destPosition: 'top right',triggerPosition: 'bottom right'"> + +<meta name="ncbi_app" content="blast"> +<meta name="ncbi_pdid" content="blastresults"> +<meta name="ncbi_stat" content="false"> +<meta name="ncbi_sessionid" content="8A8E11EE2CABF371_0000SID"> +<meta name="ncbi_phid" content="5AAB74D7368F2C81000000000000C9C8"> +<script type="text/javascript"> var ncbi_startTime = new Date(); </script> +<title>NCBI Blast:Nucleotide Sequence (16 letters)</title> +<script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jig.js"></script><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/jig.themenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbitogglernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbitogglernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbiautocompletenull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbiautocompletenull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbibasicmenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbibasicmenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbimenunull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbimenunull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbilocalnavnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbilocalnavnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.buttonnull"></script><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.ncbibuttonnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbibuttonnull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbipoppernull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbipoppernull"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.ncbigridnull"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.ncbigridnull"><link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/jig.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_002.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_005.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_004.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_004.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_007.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_003.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_007.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_003.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_008.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_008.js"></script><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_005.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_009.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_006.css"><script type="text/javascript" src="Blast%20output%20page%20example%20trimmed_files/jquery_006.js"></script><link type="text/css" rel="stylesheet" href="Blast%20output%20page%20example%20trimmed_files/jquery_002.css"> +<script type="text/javascript"> jQuery.getScript("/core/alerts/alerts.js", function() { + galert(['div#header', 'body > *:nth-child(1)']) + });</script> +<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/main.css" media="screen"> +<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/blastRes.css" media="screen"> +<!--[if IE]> +<link rel="stylesheet" type="text/css" href="css/descriptionsIE.css" media="screen" /> +<![endif]--> +<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/print.css" media="print"> +<!--[if lte IE 6]> +<link rel="stylesheet" type="text/css" href="css/ie6_or_less.css" /> +<![endif]--> +<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/blastReq.css" media="screen"> +<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/results.css" media="screen"> +<link rel="stylesheet" type="text/css" href="Blast%20output%20page%20example%20trimmed_files/dynFormatRes.css" media="screen"> + +<style media="print" type="text/css">.print-log { position:absolute;left:-10000px;top:auto;width:1px;height:1px;overflow:hidden; }.print-log li { list-style-image: url('/stat?jsevent=print&ncbi_app=blast&ncbi_pdid=blastresults&ncbi_phid=5AAB74D7368F2C81000000000000C9C8'); }</style><style type="text/css">.print-log { position:absolute;left:-10000px;top:auto;width:1px;height:1px;overflow:hidden; }</style><style type="text/css" charset="utf-8">/* See license.txt for terms of usage */ +/** reset styling **/ +.firebugResetStyles { + z-index: 2147483646 !important; + top: 0 !important; + left: 0 !important; + display: block !important; + border: 0 none !important; + margin: 0 !important; + padding: 0 !important; + outline: 0 !important; + min-width: 0 !important; + max-width: none !important; + min-height: 0 !important; + max-height: none !important; + position: fixed !important; + transform: rotate(0deg) !important; + transform-origin: 50% 50% !important; + border-radius: 0 !important; + box-shadow: none !important; + background: transparent none !important; + pointer-events: none !important; + white-space: normal !important; +} + +.firebugBlockBackgroundColor { + background-color: transparent !important; +} + +.firebugResetStyles:before, .firebugResetStyles:after { + content: "" !important; +} +/**actual styling to be modified by firebug theme**/ +.firebugCanvas { + display: none !important; +} + +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +.firebugLayoutBox { + width: auto !important; + position: static !important; +} + +.firebugLayoutBoxOffset { + opacity: 0.8 !important; + position: fixed !important; +} + +.firebugLayoutLine { + opacity: 0.4 !important; + background-color: #000000 !important; +} + +.firebugLayoutLineLeft, .firebugLayoutLineRight { + width: 1px !important; + height: 100% !important; +} + +.firebugLayoutLineTop, .firebugLayoutLineBottom { + width: 100% !important; + height: 1px !important; +} + +.firebugLayoutLineTop { + margin-top: -1px !important; + border-top: 1px solid #999999 !important; +} + +.firebugLayoutLineRight { + border-right: 1px solid #999999 !important; +} + +.firebugLayoutLineBottom { + border-bottom: 1px solid #999999 !important; +} + +.firebugLayoutLineLeft { + margin-left: -1px !important; + border-left: 1px solid #999999 !important; +} + +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +.firebugLayoutBoxParent { + border-top: 0 none !important; + border-right: 1px dashed #E00 !important; + border-bottom: 1px dashed #E00 !important; + border-left: 0 none !important; + position: fixed !important; + width: auto !important; +} + +.firebugRuler{ + position: absolute !important; +} + +.firebugRulerH { + top: -15px !important; + left: 0 !important; + width: 100% !important; + height: 14px !important; + background: 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repeat-x !important; + border-top: 1px solid #BBBBBB !important; + border-right: 1px dashed #BBBBBB !important; + border-bottom: 1px solid #000000 !important; +} + +.firebugRulerV { + top: 0 !important; + left: -15px !important; + width: 14px !important; + height: 100% !important; + background: 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repeat-y !important; + border-left: 1px solid #BBBBBB !important; + border-right: 1px solid #000000 !important; + border-bottom: 1px dashed #BBBBBB !important; +} + +.overflowRulerX > .firebugRulerV { + left: 0 !important; +} + +.overflowRulerY > .firebugRulerH { + top: 0 !important; +} + +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +.fbProxyElement { + position: fixed !important; + pointer-events: auto !important; +} +</style></head> + +<body id="type-a" class="noToggleCheck "> +<div id="wrap"> + + + <div id="content-wrap"> + + + + + + <!-- CDD info for old design --> + + + + + + + + + <div id="content"> + + <!--<ul id="msg" class="msg"><li class="info"><p class=""></p><p class=""></p><p class=""></p></li></ul>--> + + + + + + + + + <!-- Reformat and downlaod for new design --> + <!-- aria --> + <!-- aria --> + <form action="Blast.cgi" enctype="application/x-www-form-urlencoded" method="POST" name="overview0"> + + + +<div id="page"> + +<div id="summary" class=""> +<div id="ht"></div> +<h1>Nucleotide Sequence (16 letters) <span id="hdTitle" class="shownInl"></span></h1> +<div> +<div id="multipleSeqs" class="hidden"> +<label for="queryList">Results for:</label> +<select id="queryList" name="queryList"> +<option value="0" selected="selected" class="">lcl|59987 None(16bp)</option> +</select> +<a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="queryInfo" title="Multiple quries help" id="queryHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span> +<span class="ui-icon ui-icon-triangle-1-e"></span></a> +</div><!--/#multipleSeqs"--> + +<div class="ui-helper-reset" aria-live="assertive"> +<p aria-hidden="true" id="queryInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler"> +Your BLAST job specified more than one input sequence. +This box lets you choose which input sequence to show BLAST results for. +</p> +</div><!-- ARIA --> +</div> +<div id="summarylists"> +<dl> +<dt>RID</dt> +<dd> +<a title="BLAST search request ID" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014">PHWP1JNZ014</a> (Expires on 05-07 22:33 pm) +</dd> +</dl> +<div id="querysummary"> +<dl> +<dt>Query ID</dt> +<dd class="hidden"> +<a title="Find query in Entrez" href="http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=Search&db=nucleotide&term=59987&dopt=GenBank" target="lnkPHWP1JNZ014">lcl|59987</a> +</dd> +<dd class="">lcl|59987</dd> +<dt>Description</dt> +<dd>None</dd> +<dt>Molecule type</dt> +<dd>nucleic acid</dd> +<dt>Query Length</dt> +<dd>16</dd> +</dl> +</div><!--/#querysummary--> + +<div id="dbsummary"> +<dl> +<dt> </dt><dd> </dd> +<dt>Database Name</dt> +<dd>pdb</dd> +<dt>Description</dt> +<dd>PDB nucleotide database <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="See multiple databases detailed information" class="jtg resArrowLinkB hidden jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="dbDetails" id="showDetails"><span class="ui-ncbitoggler-master-text">See details</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd> <!-- -- Database or subject info ----> +<dt class="xgl">Program</dt> +<dd class="xgl">BLASTN 2.2.29+ <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="How to cite BLAST in publications" class="resArrowLinkB hidden shown jig-ncbitoggler ui-ncbitoggler jtg ui-widget" data-ncbitoggler-toggles="refInfo" id="showRefs"><span class="ui-ncbitoggler-master-text">Citation</span><span class="ui-icon ui-icon-triangle-1-e"></span></a></dd> +</dl> +</div><!--/#dbsummary--> +</div><!--/#summarylists --> +<br> +<div class="ui-helper-reset" aria-live="assertive"> +<div aria-hidden="true" id="dbDetails" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler"> + <!-- multiple databases or subjects table --> +</div> +</div> <!-- aria end --> +<div class="ui-helper-reset" aria-live="assertive"> +<div aria-hidden="true" id="refInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler"> +<a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=9254694&dopt=Citation">Reference </a> +<div>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, +Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), +"Gapped BLAST and PSI-BLAST: a new generation of protein database search + programs", Nucleic Acids Res. 25:3389-3402.</div> + </div> <!-- refInfo --> +</div> <!-- aria end --> + +<div id="seealso"> +<label>Other reports:</label> + <a aria-expanded="false" role="button" aria-disabled="false" href="#" title="Show statistics" class="resArrowLinkB jtg jig-ncbitoggler ui-ncbitoggler ui-widget" data-ncbitoggler-toggles="resStat" id="showStat"><span class="ui-ncbitoggler-master-text">Search Summary</span><span class="ui-icon ui-icon-triangle-1-e"></span></a> + <span class="xgl"> + <a id="tax" class="hidden shown" href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&RID=PHWP1JNZ014&FORMAT_OBJECT=TaxBlast&NCBI_GI=off&DESCRIPTIONS=100&ALIGNMENTS=100&FORMAT_BLOCK_ON_RESPAGE=Top&MASK_COLOR=1&MASK_CHAR=2" target="lnkPHWP1JNZ014" title="See results arranged by taxonomy">[Taxonomy reports]</a> + <a href="http://www.ncbi.nlm.nih.gov/blast/treeview/treeView.cgi?request=page&blastRID=PHWP1JNZ014&queryID=lcl%7C59987&entrezLim=&ex=&exl=&exh=&ns=100" class="" id="TreeViewlcl|59987" onclick="ViewTree('TreeViewlcl|59987');return false;" target="lnkPHWP1JNZ014" title="See a distance tree of these pairwise comparisons">[Distance tree of results]</a> + + + + </span> +</div> <!-- seealso --> + +<div class="ui-helper-reset" aria-live="assertive"> +<div aria-hidden="true" id="resStat" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler"> + <table id="params" class="dbInfo"> + <caption>Search Parameters</caption> + <tbody><tr><th><div>Search parameter name</div></th><th><div>Search parameter value</div></th></tr> + <tr><td>Program</td><td>blastn</td></tr><tr><td>Word size</td><td>7</td></tr><tr><td>Expect value</td><td>1000</td></tr><tr><td>Hitlist size</td><td>100</td></tr><tr><td>Match/Mismatch scores</td><td>1,-3</td></tr><tr><td>Gapcosts</td><td>5,2</td></tr><tr><td>Filter string </td><td>F</td></tr><tr><td>Genetic Code</td><td>1</td></tr> + </tbody></table> + <table id="dbStat" class="dbInfo"> + <caption>Database</caption> + <tbody><tr><th><div>Database parameter name</div></th><th><div>Database parameter value</div></th></tr> + <tr><td>Posted date</td><td>Apr 29, 2014 3:14 AM</td></tr> + <tr><td>Number of letters</td><td>885,284</td></tr> + <tr><td>Number of sequences</td><td>8,975</td></tr> + <tr><td>Entrez query</td><td>none</td></tr> + </tbody></table> + + <table id="Kappa" class="dbInfo show xgl"> +<caption>Karlin-Altschul statistics</caption> + <tbody><tr><th><div>Params</div></th><th><div>Ungapped</div></th><th><div>Gapped</div></th></tr> + <tr><td>Lambda</td><td>1.37406</td><td>1.37406</td></tr> + <tr><td>K</td><td>0.710603</td><td>0.710603</td></tr> + <tr><td>H</td><td>1.30725</td><td>1.30725</td></tr> + + </tbody></table> + + + <table class="dbInfo show"> + <caption>Results Statistics</caption> + <tbody><tr><th><div>Results Statistics parameter name</div></th><th><div>Results Statistics parameter value</div></th></tr> + <tr><td>Length adjustment</td><td> 11</td></tr><tr><td>Effective length of query</td><td> 5</td></tr><tr><td>Effective length of database</td><td> 786559</td></tr><tr><td>Effective search space</td><td> 3932795</td></tr><tr><td>Effective search space used</td><td> 3932795</td></tr> + </tbody></table> + <!-- Results statistics --> + </div> <!-- resStat --> + </div> <!-- aria end --> +</div><!--/#summary--> +</div><!--/#page--> + + +<div id="grView" class="hidden shown"> +<h2 class="resArr"> +<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showGraphic" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="graphicInfo" title="Show/hide Graphic Summary"> +<span class="ui-ncbitoggler-master-text">Graphic Summary</span> +<span class="ui-icon ui-icon-plus-minus-big-open"></span> +</a> +</h2> +<div class="ui-helper-reset" aria-live="assertive"> +<div aria-hidden="false" id="graphicInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler"> + + +<div id="graphic" class="hidden shown"> +<h3>Distribution of 45 Blast Hits on the Query Sequence +<a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Graphic summary help" id="grHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span> +<span class="ui-icon ui-icon-triangle-1-e"></span></a></h3> +<div class="ui-helper-reset" aria-live="assertive"> +<p aria-hidden="true" id="ovrInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler"> +An overview of the database sequences aligned to the query sequence is +shown. The score of each alignment is indicated by one of five +different colors, which divides the range of scores into five groups. +Multiple alignments on the same database sequence are connected +by a striped line. <span class="hl">Mousing over</span> a hit sequence causes the definition and score to be shown in the window at the top, +<span class="hl">clicking</span> on a hit sequence takes the user to the associated alignments. +New: +This graphic is an overview of database sequences aligned to the query sequence. +Alignments are color-coded by score, within one of five score ranges. +Multiple alignments on the same database sequence are connected by a dashed line. +<span class="hl">Mousing</span> over an alignment shows the alignment definition and score in the box at the top. +<span class="hl">Clicking</span> an alignment displays the alignment detail. +</p> +</div><!-- ARIA --> +<center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/score.gif" height="40" width="500"></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/query_no_scale.gif" height="10" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="51"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="91"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/scale.gif" height="10" width="2"></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/3.gif" height="13" width="10"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/6.gif" height="13" width="10"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="83"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/9.gif" height="13" width="10"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="73"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/1.gif" height="13" width="10"></td> +<td align="LEFT" valign="CENTER"><img alt="" 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S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><a href="#557804339" onclick='DisplayAlignFromGraphics("557804339",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J56_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><a href="#557804283" onclick='DisplayAlignFromGraphics("557804283",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J54_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><a href="#557804227" onclick='DisplayAlignFromGraphics("557804227",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J52_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><a href="#557804195" onclick='DisplayAlignFromGraphics("557804195",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J51_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><a href="#557804163" onclick='DisplayAlignFromGraphics("557804163",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J50_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><a href="#557804083" onclick='DisplayAlignFromGraphics("557804083",event)'><img alt="score 32" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J4X_A Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex I.. S=32 E=0.00079'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="500"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><a href="#485601478" onclick='DisplayAlignFromGraphics("485601478",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3F_5 Chain 5, Structure Of The H. 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Sapiens 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 14" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=14 E=1.9e+02'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="219"></a></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td> +<td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="155"></a></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="6" width="1"></td> +<td align="LEFT" valign="CENTER"><a href="#485601474" onclick='DisplayAlignFromGraphics("485601474",event)'><img alt="score 16" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J3E_5 Chain 5, Structure Of The D. Melanogaster 60s Rrna S=16 E=47'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="124"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> +<td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="94"></td> +<td align="LEFT" valign="CENTER"><a href="#357380483" onclick='DisplayAlignFromGraphics("357380483",event)'><img alt="score 18" onmouseout="document.overview0.defline.value='Mouse-over to show defline and scores, click to show alignments'" onmouseover="document.overview0.defline.value='3J0O_8 Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex .. S=18 E=12'" src="Blast%20output%20page%20example%20trimmed_files/black.gif" height="4" border="0" width="281"></a></td> +</tr></tbody></table> +<table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="550"></td></tr></tbody></table> +</td></tr></tbody></table> +</center><hr> +</div><!--/#graphic--> +</div><!-- graphicInfo --> +</div><!-- ARIA --> +</div> +<!--HITMATRIX_VIEW - only for bl2seq --> + +<div id="dscrView" class="hidden shown"> +<h2 class="resArr"> +<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showDescr" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="descrInfo" title="Show/hide Descriptions"> +<span class="ui-ncbitoggler-master-text">Descriptions</span> +<span class="ui-icon ui-icon-plus-minus-big-open"></span> +</a> +</h2> +<div class="ui-helper-reset" aria-live="assertive"> +<div aria-hidden="false" id="descrInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler"> + <!-- legend to links to other resources --> +<a name="sort_mark"></a> + + +<div id="debug">, Reading indexes 1-5, displaying indexes 1-5</div> +<input id="Rid" value="PHWP1JNZ014" type="hidden"> +<input id="useAlignDB" name="useAlignDB" value="" type="hidden"> +<input id="dbType" value="GenBank" type="hidden"><!-- Indicates genbank, etc --> +<input id="serviceType" value="plain" type="hidden"> +<input id="clientType" value="web" type="hidden"> +<input id="currQuery" value="" type="hidden"> +<input id="minDispAlnLen" value="2000" type="hidden"> +<input id="maxDispAlnLen" value="20000" type="hidden"> +<div class="hidden" id="dynHspTmpl"><div class="alnParLinks moreHsps" id="@moreHspsID@"><a class="gbd toolsCtr navNext" title="Load matches @segs@ out of @totalHSP@ for @accs@" onmouseover="scan(this)" ref="range=@segs@&currseq=@alnSeqGi@" onclick="ReadNextHSPSet(@argstring@);"><span>Load next set</span></a><a class="gbd toolsCtr navPrev" title="Go to previous match #@aln_prev_num@ for @accs@" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a></div></div> +<div id="descriptions" class="blRes"> +<!--<pre> --> +<div class="cap">Sequences producing significant alignments:</div> +<a id="shcl" href="#" onclick="showAllCol(event,this)" class="shcl hidden"> +Show all columns <span class="accsb"> of the table presenting sequences producing significant alignments </span> +</a> +<span id="cntDesc"> +<span>Select:<a href="#" id="cntSelA" sel="all">All</a><a href="#" id="cntSelN" sel="n">None</a></span> +<span>Selected:<span id="slcNum">0</span></span> +</span> + +<div id="descTblCtrl" class="cnf"> +<a href="#alignInfo" id="alnNav" class="toolsCtr alnNav" title="Go to alignments"><span>Alignments</span></a> +<a aria-haspopup="true" aria-expanded="false" role="button" href="#dsDownload" minslct="1" class="jig-ncbipopper toolsCtr dnld dialog " data-jigconfig="hasArrow:'true',arrowDirection:'top'" id="dscDwnld" disabled="disabled" title="Download information for selected sequences"><span>Download</span></a> + +<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsDownload" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic"> +<div class=""><input name="dwn" checked="checked" id="dwFST" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST">FASTA (complete sequence)</label></div> +<div class=""><input name="dwn" id="dwFSTAl" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl">FASTA (aligned sequences)</label></div> +<div class=""><input name="dwn" id="dwGenBank" getgi="on" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class=" shownInl" for="dwGenBank">GenBank (complete sequence)</label></div> +<div><input name="dwn" id="dwHitText" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=Text&FORMAT_OBJECT=Alignment&ALIGNMENT_VIEW=Tabular&CMD=Get" type="radio"><label class="shownInl" for="dwHitText">Hit Table (text)</label></div> +<div><input name="dwn" id="dwHitCsv" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=CSV&FORMAT_OBJECT=Alignment&ALIGNMENT_VIEW=Tabular&CMD=Get" type="radio"><label class="shownInl" for="dwHitCsv">Hit Table (CSV)</label></div> +<div><input name="dwn" id="dwText" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=Text&FORMAT_OBJECT=Alignment&CMD=Get" type="radio"><label class="shownInl" for="dwText">Text</label></div> +<div><input name="dwn" id="dwXML" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=XML&FORMAT_OBJECT=Alignment&CMD=Get" type="radio"><label class="shownInl" for="dwXML">XML</label></div> +<div><input name="dwn" id="dwASN" url="Blast.cgi?RESULTS_FILE=on&RID=PHWP1JNZ014&FORMAT_TYPE=ASN.1&FORMAT_OBJECT=Alignment&CMD=Get" type="radio"><label class="shownInl" for="dwASN">ASN.1</label></div> +<div> +<button class="cfg" id="dw_cont">Continue</button> +<button class="cfg cnc">Cancel</button> +</div> +</div> <!-- dsDownload --> + + + + + +<a href="#" class="toolsCtr" minslct="1" view="dflt" frm="submitterTop" seqlist="selSeqs" title="See genbank report for selected sequences" disabled="disabled">GenBank</a> <!-- genbank or Traces --> +<a href="#" class="toolsCtr " minslct="1" view="graph" title="See graphic representation for selected sequences" disabled="disabled">Graphics</a> +<a href="#" class="toolsCtr hidden shown" view="tree" minslct="1" frm="sbmtTreeView" seqlist="selSeqsTr" disabled="disabled" title="See a distance tree of pairwise comparisons for the selected sequences">Distance tree of results</a> +<a href="#" class="toolsCtr hidden " view="dflt" minslct="2" frm="sbmtMultiAln" seqlist="selSeqsMl" disabled="disabled" title="See multple alignment of query and target sequences for the selected sequences with expect value better than 0.001">Multiple alignment</a> + +<a aria-haspopup="true" aria-expanded="false" role="button" class="jig-ncbipopper button_config" title="Show/hide columns" id="button_config" href="#dsConfig"><span class="accsb">Show/hide columns of the table presenting sequences producing significant alignments </span></a> + +<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsConfig" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic"> +<div class="tl">Available columns</div> +<input checked="checked" id="chkDs" value="2" type="checkbox"><label class="shownInl" for="chkDs">Description</label><br> +<input checked="checked" id="chkMS" value="3" type="checkbox"><label class="shownInl" for="chkMs">Max Score</label><br> +<input checked="checked" id="chkTS" value="4" type="checkbox"><label class="shownInl" for="chkTs">Total Score</label><br> +<input checked="checked" id="chkCov" value="5" type="checkbox"><label class="shownInl" for="chkCov">Coverage</label><br> +<input checked="checked" id="chkEval" value="6" type="checkbox"><label class="shownInl" for="chkEval">E-value</label><br> +<input checked="checked" id="chkIdnt" value="7" type="checkbox"><label class="shownInl" for="chkIdnt"><span class="">Ident</span><span class="hidden">N</span></label><br> +<input checked="checked" id="chkAcc" value="8" type="checkbox"><label class="shownInl" for="chkAcc">Accession</label><br> +<button class="cfg rdf" id="dscRsDf">Restore Defaults</button> +<button class="cfg" id="dscOk">Ok</button> +<button class="cfg cnc" id="dscCnc">Cancel</button> +</div> <!-- dsConfig --> + +<input id="cfcDsInf" defval="2,3,4,5,6,7,8" value="2,3,4,5,6,7,8" type="hidden"> +</div> +<div class="ui-ncbigrid-outer-div caption-exists"> +<div class="ui-ncbigrid-inner-div"> +<table id="dscTable" class="jig-ncbigrid ui-ncbigrid" data-jigconfig="" cellpadding="0" cellspacing="0"> +<caption class="hdnHeader">Sequences producing significant alignments:</caption> +<thead> +<tr class="first"> + <th class="c0" id="c0"><span>Select for downloading or viewing reports</span></th> + <th class="dflnDth c2" id="c2">Description</th> + <th class=" c3" id="c3"> + + <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&OLD_VIEW=false&DISPLAY_SORT=1&HSP_SORT=1" class="dcs" title="Sort by max score">Max score</a> + </th> + <th class=" c4" id="c4"> + <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&OLD_VIEW=false&DISPLAY_SORT=2&HSP_SORT=1" class="dcs" title="Sort by total score">Total score</a> + </th> + <th class=" c5" id="c5"> + <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&OLD_VIEW=false&DISPLAY_SORT=4&HSP_SORT=0" class="dcs" title="Sort by query coverage">Query cover</a> + </th> + <th class="sel c6" id="c6"> + <a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&OLD_VIEW=false&DISPLAY_SORT=0&HSP_SORT=0" class="dcs" title="Sort by E value">E value</a> + </th> + <th class="c7" id="c7"> +<a href="http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Get&ALIGNMENTS=100&ALIGNMENT_VIEW=Pairwise&DATABASE_SORT=0&DESCRIPTIONS=100&DYNAMIC_FORMAT=on&FIRST_QUERY_NUM=0&FORMAT_OBJECT=Alignment&FORMAT_PAGE_TARGET=&FORMAT_TYPE=HTML&GET_SEQUENCE=yes&I_THRESH=&LINE_LENGTH=60&MASK_CHAR=2&MASK_COLOR=1&NUM_OVERVIEW=100&OLD_BLAST=false&PAGE=Nucleotides&QUERY_INDEX=0&QUERY_NUMBER=0&RESULTS_PAGE_TARGET=&RID=PHWP1JNZ014&SHOW_LINKOUT=yes&SHOW_OVERVIEW=yes&STEP_NUMBER=&WORD_SIZE=7&DISPLAY_SORT=3&HSP_SORT=3" class="dcs" title="Sort by ident">Ident</a> +</th> + + <th class="c1" id="c8">Accession</th> +</tr> +</thead> +<tbody> +<tr id="dtr_557804451" ind="1" class="odd dflLnk"> +<td class="l c0"><span class="ind">1</span><input id="chk_1" class="cb" name="getSeqGi" value="557804451" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_1" class="accsb">Select seq pdb|3J5A|A</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="1" accs="pdb|3J5A|A" seqfsta="gi|557804451" gi="557804451" seqid="557804451" id="deflnDesc_1" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804451">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit)</a> +</div> +</td> +<td class="c3">32.2</td> +<td class="c4">77.3</td> +<td class="c5">100%</td> +<td class="c6">8e-04</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nucltop&blast_rank=1&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J5A_A">3J5A_A</a> +</td> +</tr><tr id="dtr_557804395" ind="2" class="even dflLnk"> +<td class="l c0"><span class="ind">2</span><input id="chk_2" class="cb" name="getSeqGi" value="557804395" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_2" class="accsb">Select seq pdb|3J58|A</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="2" accs="pdb|3J58|A" seqfsta="gi|557804395" gi="557804395" seqid="557804395" id="deflnDesc_2" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804395">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit)</a> +</div> +</td> +<td class="c3">32.2</td> +<td class="c4">77.3</td> +<td class="c5">100%</td> +<td class="c6">8e-04</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nucltop&blast_rank=2&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J58_A">3J58_A</a> +</td> +</tr><tr id="dtr_557804339" ind="3" class="odd dflLnk"> +<td class="l c0"><span class="ind">3</span><input id="chk_3" class="cb" name="getSeqGi" value="557804339" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_3" class="accsb">Select seq pdb|3J56|A</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="3" accs="pdb|3J56|A" seqfsta="gi|557804339" gi="557804339" seqid="557804339" id="deflnDesc_3" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804339">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit)</a> +</div> +</td> +<td class="c3">32.2</td> +<td class="c4">77.3</td> +<td class="c5">100%</td> +<td class="c6">8e-04</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nucltop&blast_rank=3&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J56_A">3J56_A</a> +</td> +</tr><tr id="dtr_557804283" ind="4" class="even dflLnk"> +<td class="l c0"><span class="ind">4</span><input id="chk_4" class="cb" name="getSeqGi" value="557804283" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_4" class="accsb">Select seq pdb|3J54|A</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="4" accs="pdb|3J54|A" seqfsta="gi|557804283" gi="557804283" seqid="557804283" id="deflnDesc_4" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804283">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit)</a> +</div> +</td> +<td class="c3">32.2</td> +<td class="c4">77.3</td> +<td class="c5">100%</td> +<td class="c6">8e-04</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nucltop&blast_rank=4&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J54_A">3J54_A</a> +</td> +</tr><tr id="dtr_557804227" ind="5" class="odd dflLnk"> +<td class="l c0"><span class="ind">5</span><input id="chk_5" class="cb" name="getSeqGi" value="557804227" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_5" class="accsb">Select seq pdb|3J52|A</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a stat="disp" title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="5" accs="pdb|3J52|A" seqfsta="gi|557804227" gi="557804227" seqid="557804227" id="deflnDesc_5" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804227">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit)</a> +</div> +</td> +<td class="c3">32.2</td> +<td class="c4">77.3</td> +<td class="c5">100%</td> +<td class="c6">8e-04</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nucltop&blast_rank=5&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J52_A">3J52_A</a> +</td> +</tr><tr id="dtr_557804195" ind="6" class="even dflLnk"> +<td class="l c0"><span class="ind">6</span><input id="chk_6" class="cb" name="getSeqGi" value="557804195" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_6" class="accsb">Select seq pdb|3J51|A</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="6" accs="pdb|3J51|A" seqfsta="gi|557804195" gi="557804195" seqid="557804195" id="deflnDesc_6" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804195">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre3, 50s Subunit)</a> +</div> +</td> +<td class="c3">32.2</td> +<td class="c4">77.3</td> +<td class="c5">100%</td> +<td class="c6">8e-04</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804195?report=genbank&log$=nucltop&blast_rank=6&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J51_A">3J51_A</a> +</td> +</tr><tr id="dtr_557804163" ind="7" class="odd dflLnk"> +<td class="l c0"><span class="ind">7</span><input id="chk_7" class="cb" name="getSeqGi" value="557804163" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_7" class="accsb">Select seq pdb|3J50|A</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="7" accs="pdb|3J50|A" seqfsta="gi|557804163" gi="557804163" seqid="557804163" id="deflnDesc_7" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804163">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Intermediate Pre- Translocation State (pre2, 50s Subunit)</a> +</div> +</td> +<td class="c3">32.2</td> +<td class="c4">77.3</td> +<td class="c5">100%</td> +<td class="c6">8e-04</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804163?report=genbank&log$=nucltop&blast_rank=7&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J50_A">3J50_A</a> +</td> +</tr><tr id="dtr_557804083" ind="8" class="even dflLnk"> +<td class="l c0"><span class="ind">8</span><input id="chk_8" class="cb" name="getSeqGi" value="557804083" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_8" class="accsb">Select seq pdb|3J4X|A</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a title="Go to alignment for Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)" class="deflnDesc" hsp="4" len="38" ind="8" accs="pdb|3J4X|A" seqfsta="gi|557804083" gi="557804083" seqid="557804083" id="deflnDesc_8" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_557804083">Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1b, 50s Subunit)</a> +</div> +</td> +<td class="c3">32.2</td> +<td class="c4">77.3</td> +<td class="c5">100%</td> +<td class="c6">8e-04</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804083?report=genbank&log$=nucltop&blast_rank=8&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J4X_A">3J4X_A</a> +</td> +</tr><tr id="dtr_485601478" ind="9" class="odd dflLnk"> +<td class="l c0"><span class="ind">9</span><input id="chk_9" class="cb" name="getSeqGi" value="485601478" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_9" class="accsb">Select seq pdb|3J3F|5</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a title="Go to alignment for Chain 5, Structure Of The H. Sapiens 60s Rrna" class="deflnDesc" hsp="8" len="63" ind="9" accs="pdb|3J3F|5" seqfsta="gi|485601478" gi="485601478" seqid="485601478" id="deflnDesc_9" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_485601478">Chain 5, Structure Of The H. Sapiens 60s Rrna</a> +</div> +</td> +<td class="c3">18.3</td> +<td class="c4"> 128</td> +<td class="c5">100%</td> +<td class="c6"> 12</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/485601478?report=genbank&log$=nucltop&blast_rank=9&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J3F_5">3J3F_5</a> +</td> +</tr><tr id="dtr_485601474" ind="10" class="even dflLnk"> +<td class="l c0"><span class="ind">10</span><input id="chk_10" class="cb" name="getSeqGi" value="485601474" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_10" class="accsb">Select seq pdb|3J3E|5</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a title="Go to alignment for Chain 5, Structure Of The D. Melanogaster 60s Rrna" class="deflnDesc" hsp="4" len="31" ind="10" accs="pdb|3J3E|5" seqfsta="gi|485601474" gi="485601474" seqid="485601474" id="deflnDesc_10" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_485601474">Chain 5, Structure Of The D. Melanogaster 60s Rrna</a> +</div> +</td> +<td class="c3">18.3</td> +<td class="c4">63.4</td> +<td class="c5">100%</td> +<td class="c6"> 12</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/485601474?report=genbank&log$=nucltop&blast_rank=10&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J3E_5">3J3E_5</a> +</td> +</tr><tr id="dtr_357380483" ind="11" class="odd dflLnk"> +<td class="l c0"><span class="ind">11</span><input id="chk_11" class="cb" name="getSeqGi" value="357380483" onclick="configDescrLinks(event,this)" type="checkbox"><label for="chk_11" class="accsb">Select seq pdb|3J0O|8</label></td> +<td class="lim l c2"> +<div class="lim n"> +<a title="Go to alignment for Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2" class="deflnDesc" hsp="1" len="9" ind="11" accs="pdb|3J0O|8" seqfsta="gi|357380483" gi="357380483" seqid="357380483" id="deflnDesc_11" onclick="DisplayAlignFromDescription(this);" href="#alnHdr_357380483">Chain 8, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9a Cryo-Em Map: Classic Pre State 2</a> +</div> +</td> +<td class="c3">18.3</td> +<td class="c4">18.3</td> +<td class="c5">56%</td> +<td class="c6"> 12</td><td class="c7">100%</td> +<td class="c1 l lim"> +<a href="http://www.ncbi.nlm.nih.gov/nucleotide/357380483?report=genbank&log$=nucltop&blast_rank=11&RID=PHWP1JNZ014" class="dflSeq" target="lnkPHWP1JNZ014" title="Show report for 3J0O_8">3J0O_8</a> +</td> +</tr> +</tbody> +</table> +</div></div> +<!--</pre> --> +</div><!--/#descriptions--> +</div><!-- descrInfo --> +</div><!--ARIA--> +</div> +</form><!-- this is the end tag for the <form in blastcgi templates --> + + + + + +<!-- used in redesign --> + +<div id="alignView" class=" "> +<h2 class="resArr"> +<a aria-expanded="true" role="button" aria-disabled="false" href="#" id="showAlign" class="jig-ncbitoggler-open ui-ncbitoggler-open ui-widget" data-jigconfig="indicator: 'plus-minus-big'" data-ncbitoggler-toggles="alignInfo" title="Show/hide Alignments"> +<span class="ui-ncbitoggler-master-text">Alignments</span> +<span class="ui-icon ui-icon-plus-minus-big-open"></span> +</a> +</h2> + +<div class="ui-helper-reset" aria-live="assertive"> +<div aria-hidden="false" id="alignInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler"> +<div id="alignments" class="blRes"> +<span id="alnStart"></span><div seqlist="gi|557804451,gi|557804395,gi|557804339,gi|557804283,gi|557804227" indexes="1-5" id="alnShow_1" class="alnMsg"><div class="alnMsgS hidden" id="alnMsg_1">Loading alignment...<span class="db"> for sequences gi|557804451,gi|557804395,gi|557804339,gi|557804283,gi|557804227 Reading indexes 1-5</span></div><div id="alnShowReal_1" class="alnMsgR"><form name="getSeqAlignment1"> +<div class="alnHdr cnf" id="alnHdr_557804451" seqid="557804451" accs="pdb|3J5A|A"> +<a name="557804451"></a> +<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804451" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804451" title="Download information for pdb|3J5A|A"><span>Download</span></a> +<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804451" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic"> +<div><input seqfsta="gi|557804451" name="dwn_557804451" checked="checked" id="dwFST_557804451" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804451">FASTA (complete sequence)</label></div> +<div><input seqfsta="gi|557804451" name="dwn_557804451" id="dwFSTAl_557804451" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804451">FASTA (aligned sequences)</label></div> +<div class=""><input name="dwn_557804451" id="dwGenBank_557804451" getgi="557804451" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804451">GenBank (complete sequence)</label></div> +<div> +<button class="cfg" id="dw_cont_557804451">Continue</button> +<button class="cfg cnc">Cancel</button> +</div> +</div> <!-- dsDownload --> +<span class="csLinks" id="csLinks_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics">Graphics</a></span> + +<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label> +<select id="sa_557804451" onchange="SortHSPAlnSel(event,this)"> +<option selected="selected" value="0">E value</option> +<option value="1"> Score</option> +<option value="3">Percent identity</option> +<option value="2">Query start position</option> +<option value="4">Subject start position</option> +</select> +</div> +<span class="alnSeqLinks"> +<a title="Go to next alignment for pdb|3J58|A" class="gbd toolsCtr navNext" ref="ordinalpos=1&currseq=557804451" id="alnNxt_557804451" onclick="goToNextAlign('dtr_557804451',true);"><span>Next</span></a> +<a disabled="disabled" class="gbd toolsCtr navPrev" ref="ordinalpos=1&currseq=557804451" id="alnPrv_557804451" onclick="goToNextAlign('dtr_557804451',false);"><span>Previous</span></a> +<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J5A|A" id="alnDsc_557804451" onclick="goToDefLine('dtr_557804451');" href="#dtr_557804451"><span>Descriptions</span></a> +</span> +</div> +<div class="oneSeqAln" id="aln_557804451"> +<div id="dln_557804451"> +<div class="dlfRow"> +Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Post- Translocation State (post1, 50s Subunit) +<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J5A|A">pdb|3J5A|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div> +</div> +</div> +<div class="relInf" id="relInf_557804451"><label>Related Information</label></div> +<!-- +<pre> +<@aln_gene_info@> +</pre> +--> +<div class="alnAll" id="alnAll_557804451"><div id="hd_557804451_1"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span> +<span id="hsp557804451_1" class="alnParLinks"> +<a init="on" class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack hidden" href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #1</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>32.2 bits(16)</td> +<td>8e-04<span class="sumN ">()</span></td> +<td>16/16(100%)</td> +<td>0/16(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804451_1"> +<pre>Query 1 CGTCCGTCGTGAAGAG 16 + |||||||||||||||| +Sbjct 961 CGTCCGTCGTGAAGAG 976 + + +</pre> +</div> +<div id="hd_557804451_2"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span> +<span id="hsp557804451_2" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #2</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>16.4 bits(8)</td> +<td> 47<span class="sumN ">()</span></td> +<td>8/8(100%)</td> +<td>0/8(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804451_2"> +<pre>Query 5 CGTCGTGA 12 + |||||||| +Sbjct 2591 CGTCGTGA 2598 + + +</pre> +</div> +<div id="hd_557804451_3"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span> +<span id="hsp557804451_3" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #3</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804451_3"> +<pre>Query 7 TCGTGAA 13 + ||||||| +Sbjct 839 TCGTGAA 845 + + +</pre> +</div> +<div id="hd_557804451_4"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804451"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804451?report=genbank&log$=nuclalign&blast_rank=1&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J5A_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804451?report=graph&rid=PHWP1JNZ014[557804451]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J5A_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span> +<span id="hsp557804451_4" class="alnParLinks"> +<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804451" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J5A|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804451" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804451_1" title="Go to first match for pdb|3J5A|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #4</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804451_4"> +<pre>Query 9 GTGAAGA 15 + ||||||| +Sbjct 2027 GTGAAGA 2033 + + +</pre> +</div> +</div> <!-- alnAll_557804451 --> +</div> <!-- aln_557804451 --> +<div class="alnHdr cnf" id="alnHdr_557804395" seqid="557804395" accs="pdb|3J58|A"> +<a name="557804395"></a> +<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804395" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804395" title="Download information for pdb|3J58|A"><span>Download</span></a> +<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804395" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic"> +<div><input seqfsta="gi|557804395" name="dwn_557804395" checked="checked" id="dwFST_557804395" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804395">FASTA (complete sequence)</label></div> +<div><input seqfsta="gi|557804395" name="dwn_557804395" id="dwFSTAl_557804395" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804395">FASTA (aligned sequences)</label></div> +<div class=""><input name="dwn_557804395" id="dwGenBank_557804395" getgi="557804395" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804395">GenBank (complete sequence)</label></div> +<div> +<button class="cfg" id="dw_cont_557804395">Continue</button> +<button class="cfg cnc">Cancel</button> +</div> +</div> <!-- dsDownload --> +<span class="csLinks" id="csLinks_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics">Graphics</a></span> + +<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label> +<select id="sa_557804395" onchange="SortHSPAlnSel(event,this)"> +<option selected="selected" value="0">E value</option> +<option value="1"> Score</option> +<option value="3">Percent identity</option> +<option value="2">Query start position</option> +<option value="4">Subject start position</option> +</select> +</div> +<span class="alnSeqLinks"> +<a title="Go to next alignment for pdb|3J56|A" class="gbd toolsCtr navNext" ref="ordinalpos=2&currseq=557804395" id="alnNxt_557804395" onclick="goToNextAlign('dtr_557804395',true);"><span>Next</span></a> +<a title="Go to previous alignment for pdb|3J5A|A" class="gbd toolsCtr navPrev" ref="ordinalpos=2&currseq=557804395" id="alnPrv_557804395" onclick="goToNextAlign('dtr_557804395',false);"><span>Previous</span></a> +<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J58|A" id="alnDsc_557804395" onclick="goToDefLine('dtr_557804395');" href="#dtr_557804395"><span>Descriptions</span></a> +</span> +</div> +<div class="oneSeqAln" id="aln_557804395"> +<div id="dln_557804395"> +<div class="dlfRow"> +Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5b, 50s Subunit) +<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J58|A">pdb|3J58|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div> +</div> +</div> +<div class="relInf" id="relInf_557804395"><label>Related Information</label></div> +<!-- +<pre> +<@aln_gene_info@> +</pre> +--> +<div class="alnAll" id="alnAll_557804395"><div id="hd_557804395_1"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span> +<span id="hsp557804395_1" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack hidden" href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #1</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>32.2 bits(16)</td> +<td>8e-04<span class="sumN ">()</span></td> +<td>16/16(100%)</td> +<td>0/16(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804395_1"> +<pre>Query 1 CGTCCGTCGTGAAGAG 16 + |||||||||||||||| +Sbjct 961 CGTCCGTCGTGAAGAG 976 + + +</pre> +</div> +<div id="hd_557804395_2"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span> +<span id="hsp557804395_2" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #2</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>16.4 bits(8)</td> +<td> 47<span class="sumN ">()</span></td> +<td>8/8(100%)</td> +<td>0/8(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804395_2"> +<pre>Query 5 CGTCGTGA 12 + |||||||| +Sbjct 2591 CGTCGTGA 2598 + + +</pre> +</div> +<div id="hd_557804395_3"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span> +<span id="hsp557804395_3" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #3</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804395_3"> +<pre>Query 7 TCGTGAA 13 + ||||||| +Sbjct 839 TCGTGAA 845 + + +</pre> +</div> +<div id="hd_557804395_4"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804395"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804395?report=genbank&log$=nuclalign&blast_rank=2&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J58_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804395?report=graph&rid=PHWP1JNZ014[557804395]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J58_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span> +<span id="hsp557804395_4" class="alnParLinks"> +<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804395" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J58|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804395" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804395_1" title="Go to first match for pdb|3J58|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #4</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804395_4"> +<pre>Query 9 GTGAAGA 15 + ||||||| +Sbjct 2027 GTGAAGA 2033 + + +</pre> +</div> +</div> <!-- alnAll_557804395 --> +</div> <!-- aln_557804395 --> +<div class="alnHdr cnf" id="alnHdr_557804339" seqid="557804339" accs="pdb|3J56|A"> +<a name="557804339"></a> +<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804339" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804339" title="Download information for pdb|3J56|A"><span>Download</span></a> +<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804339" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic"> +<div><input seqfsta="gi|557804339" name="dwn_557804339" checked="checked" id="dwFST_557804339" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804339">FASTA (complete sequence)</label></div> +<div><input seqfsta="gi|557804339" name="dwn_557804339" id="dwFSTAl_557804339" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804339">FASTA (aligned sequences)</label></div> +<div class=""><input name="dwn_557804339" id="dwGenBank_557804339" getgi="557804339" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804339">GenBank (complete sequence)</label></div> +<div> +<button class="cfg" id="dw_cont_557804339">Continue</button> +<button class="cfg cnc">Cancel</button> +</div> +</div> <!-- dsDownload --> +<span class="csLinks" id="csLinks_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics">Graphics</a></span> + +<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label> +<select id="sa_557804339" onchange="SortHSPAlnSel(event,this)"> +<option selected="selected" value="0">E value</option> +<option value="1"> Score</option> +<option value="3">Percent identity</option> +<option value="2">Query start position</option> +<option value="4">Subject start position</option> +</select> +</div> +<span class="alnSeqLinks"> +<a title="Go to next alignment for pdb|3J54|A" class="gbd toolsCtr navNext" ref="ordinalpos=3&currseq=557804339" id="alnNxt_557804339" onclick="goToNextAlign('dtr_557804339',true);"><span>Next</span></a> +<a title="Go to previous alignment for pdb|3J58|A" class="gbd toolsCtr navPrev" ref="ordinalpos=3&currseq=557804339" id="alnPrv_557804339" onclick="goToNextAlign('dtr_557804339',false);"><span>Previous</span></a> +<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J56|A" id="alnDsc_557804339" onclick="goToDefLine('dtr_557804339');" href="#dtr_557804339"><span>Descriptions</span></a> +</span> +</div> +<div class="oneSeqAln" id="aln_557804339"> +<div id="dln_557804339"> +<div class="dlfRow"> +Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre5a, 50s Subunit) +<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J56|A">pdb|3J56|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div> +</div> +</div> +<div class="relInf" id="relInf_557804339"><label>Related Information</label></div> +<!-- +<pre> +<@aln_gene_info@> +</pre> +--> +<div class="alnAll" id="alnAll_557804339"><div id="hd_557804339_1"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span> +<span id="hsp557804339_1" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack hidden" href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #1</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>32.2 bits(16)</td> +<td>8e-04<span class="sumN ">()</span></td> +<td>16/16(100%)</td> +<td>0/16(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804339_1"> +<pre>Query 1 CGTCCGTCGTGAAGAG 16 + |||||||||||||||| +Sbjct 961 CGTCCGTCGTGAAGAG 976 + + +</pre> +</div> +<div id="hd_557804339_2"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span> +<span id="hsp557804339_2" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #2</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>16.4 bits(8)</td> +<td> 47<span class="sumN ">()</span></td> +<td>8/8(100%)</td> +<td>0/8(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804339_2"> +<pre>Query 5 CGTCGTGA 12 + |||||||| +Sbjct 2591 CGTCGTGA 2598 + + +</pre> +</div> +<div id="hd_557804339_3"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span> +<span id="hsp557804339_3" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #3</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804339_3"> +<pre>Query 7 TCGTGAA 13 + ||||||| +Sbjct 839 TCGTGAA 845 + + +</pre> +</div> +<div id="hd_557804339_4"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804339"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804339?report=genbank&log$=nuclalign&blast_rank=3&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J56_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804339?report=graph&rid=PHWP1JNZ014[557804339]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J56_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span> +<span id="hsp557804339_4" class="alnParLinks"> +<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804339" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J56|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804339" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804339_1" title="Go to first match for pdb|3J56|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #4</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804339_4"> +<pre>Query 9 GTGAAGA 15 + ||||||| +Sbjct 2027 GTGAAGA 2033 + + +</pre> +</div> +</div> <!-- alnAll_557804339 --> +</div> <!-- aln_557804339 --> +<div class="alnHdr cnf" id="alnHdr_557804283" seqid="557804283" accs="pdb|3J54|A"> +<a name="557804283"></a> +<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804283" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804283" title="Download information for pdb|3J54|A"><span>Download</span></a> +<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804283" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic"> +<div><input seqfsta="gi|557804283" name="dwn_557804283" checked="checked" id="dwFST_557804283" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804283">FASTA (complete sequence)</label></div> +<div><input seqfsta="gi|557804283" name="dwn_557804283" id="dwFSTAl_557804283" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804283">FASTA (aligned sequences)</label></div> +<div class=""><input name="dwn_557804283" id="dwGenBank_557804283" getgi="557804283" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804283">GenBank (complete sequence)</label></div> +<div> +<button class="cfg" id="dw_cont_557804283">Continue</button> +<button class="cfg cnc">Cancel</button> +</div> +</div> <!-- dsDownload --> +<span class="csLinks" id="csLinks_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics">Graphics</a></span> + +<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label> +<select id="sa_557804283" onchange="SortHSPAlnSel(event,this)"> +<option selected="selected" value="0">E value</option> +<option value="1"> Score</option> +<option value="3">Percent identity</option> +<option value="2">Query start position</option> +<option value="4">Subject start position</option> +</select> +</div> +<span class="alnSeqLinks"> +<a title="Go to next alignment for pdb|3J52|A" class="gbd toolsCtr navNext" ref="ordinalpos=4&currseq=557804283" id="alnNxt_557804283" onclick="goToNextAlign('dtr_557804283',true);"><span>Next</span></a> +<a title="Go to previous alignment for pdb|3J56|A" class="gbd toolsCtr navPrev" ref="ordinalpos=4&currseq=557804283" id="alnPrv_557804283" onclick="goToNextAlign('dtr_557804283',false);"><span>Previous</span></a> +<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J54|A" id="alnDsc_557804283" onclick="goToDefLine('dtr_557804283');" href="#dtr_557804283"><span>Descriptions</span></a> +</span> +</div> +<div class="oneSeqAln" id="aln_557804283"> +<div id="dln_557804283"> +<div class="dlfRow"> +Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Hybrid Pre- Translocation State (pre4, 50s Subunit) +<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J54|A">pdb|3J54|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div> +</div> +</div> +<div class="relInf" id="relInf_557804283"><label>Related Information</label></div> +<!-- +<pre> +<@aln_gene_info@> +</pre> +--> +<div class="alnAll" id="alnAll_557804283"><div id="hd_557804283_1"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span> +<span id="hsp557804283_1" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack hidden" href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #1</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>32.2 bits(16)</td> +<td>8e-04<span class="sumN ">()</span></td> +<td>16/16(100%)</td> +<td>0/16(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804283_1"> +<pre>Query 1 CGTCCGTCGTGAAGAG 16 + |||||||||||||||| +Sbjct 961 CGTCCGTCGTGAAGAG 976 + + +</pre> +</div> +<div id="hd_557804283_2"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span> +<span id="hsp557804283_2" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #2</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>16.4 bits(8)</td> +<td> 47<span class="sumN ">()</span></td> +<td>8/8(100%)</td> +<td>0/8(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804283_2"> +<pre>Query 5 CGTCGTGA 12 + |||||||| +Sbjct 2591 CGTCGTGA 2598 + + +</pre> +</div> +<div id="hd_557804283_3"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span> +<span id="hsp557804283_3" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #3</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804283_3"> +<pre>Query 7 TCGTGAA 13 + ||||||| +Sbjct 839 TCGTGAA 845 + + +</pre> +</div> +<div id="hd_557804283_4"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804283"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804283?report=genbank&log$=nuclalign&blast_rank=4&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J54_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804283?report=graph&rid=PHWP1JNZ014[557804283]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J54_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span> +<span id="hsp557804283_4" class="alnParLinks"> +<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804283" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J54|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804283" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804283_1" title="Go to first match for pdb|3J54|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #4</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804283_4"> +<pre>Query 9 GTGAAGA 15 + ||||||| +Sbjct 2027 GTGAAGA 2033 + + +</pre> +</div> +</div> <!-- alnAll_557804283 --> +</div> <!-- aln_557804283 --> +<div class="alnHdr cnf" id="alnHdr_557804227" seqid="557804227" accs="pdb|3J52|A"> +<a name="557804227"></a> +<a aria-haspopup="true" aria-expanded="false" role="button" href="#dlgDwnl_557804227" class="jig-ncbipopper toolsCtr dnld dialog" data-jigconfig="hasArrow:'true',arrowDirection:'top',closeEvent: 'click', openEvent: 'click', destPosition: 'top center', triggerPosition: 'bottom right'" id="alnDwnld_557804227" title="Download information for pdb|3J52|A"><span>Download</span></a> +<div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dlgDwnl_557804227" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic"> +<div><input seqfsta="gi|557804227" name="dwn_557804227" checked="checked" id="dwFST_557804227" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST_557804227">FASTA (complete sequence)</label></div> +<div><input seqfsta="gi|557804227" name="dwn_557804227" id="dwFSTAl_557804227" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl_557804227">FASTA (aligned sequences)</label></div> +<div class=""><input name="dwn_557804227" id="dwGenBank_557804227" getgi="557804227" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&rettype=gb&retmode=text" type="radio"><label class="shownInl" for="dwGenBank_557804227">GenBank (complete sequence)</label></div> +<div> +<button class="cfg" id="dw_cont_557804227">Continue</button> +<button class="cfg cnc">Cancel</button> +</div> +</div> <!-- dsDownload --> +<span class="csLinks" id="csLinks_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014" class="" target="lnkPHWP1JNZ014" title="Show genbank report for 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=752:2685&appname=ncbiblast&link_loc=fromSubj" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics">Graphics</a></span> + +<div class="seqlinks alnDflLn alnSortSeq"><label>Sort by:</label> +<select id="sa_557804227" onchange="SortHSPAlnSel(event,this)"> +<option selected="selected" value="0">E value</option> +<option value="1"> Score</option> +<option value="3">Percent identity</option> +<option value="2">Query start position</option> +<option value="4">Subject start position</option> +</select> +</div> +<span class="alnSeqLinks"> +<a title="Go to next alignment for pdb|3J51|A" class="gbd toolsCtr navNext" ref="ordinalpos=5&currseq=557804227" id="alnNxt_557804227" onclick="goToNextAlign('dtr_557804227',true);"><span>Next</span></a> +<a title="Go to previous alignment for pdb|3J54|A" class="gbd toolsCtr navPrev" ref="ordinalpos=5&currseq=557804227" id="alnPrv_557804227" onclick="goToNextAlign('dtr_557804227',false);"><span>Previous</span></a> +<a class="gbd toolsCtr navBack" title="Go to definition line for pdb|3J52|A" id="alnDsc_557804227" onclick="goToDefLine('dtr_557804227');" href="#dtr_557804227"><span>Descriptions</span></a> +</span> +</div> +<div class="oneSeqAln" id="aln_557804227"> +<div id="dln_557804227"> +<div class="dlfRow"> +Chain A, E. Coli 70s-fmetval-trnaval-trnafmet Complex In Classic Pre- Translocation State (pre1a, 50s Subunit) +<div><label>Sequence ID: </label><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014" target="lnkPHWP1JNZ014" title="Show report for pdb|3J52|A">pdb|3J52|A</a><span class=" r"><label>Length: </label>2903<label>Number of Matches: </label>4</span></div> +</div> +</div> +<div class="relInf" id="relInf_557804227"><label>Related Information</label></div> +<!-- +<pre> +<@aln_gene_info@> +</pre> +--> +<div class="alnAll" id="alnAll_557804227"><div id="hd_557804227_1"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 1: 961 to 976</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014&from=961&to=976" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 961 to 976 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=961:976&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 961 to 976 range">Graphics</a></span></span> +<span id="hsp557804227_1" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #2 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" disabled="disabled" title="Go to previous match #0 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=1&currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack hidden" href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #1</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>32.2 bits(16)</td> +<td>8e-04<span class="sumN ">()</span></td> +<td>16/16(100%)</td> +<td>0/16(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804227_1"> +<pre>Query 1 CGTCCGTCGTGAAGAG 16 + |||||||||||||||| +Sbjct 961 CGTCCGTCGTGAAGAG 976 + + +</pre> +</div> +<div id="hd_557804227_2"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 2: 2591 to 2598</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014&from=2591&to=2598" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2591 to 2598 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2591:2598&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 2591 to 2598 range">Graphics</a></span></span> +<span id="hsp557804227_2" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #3 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #1 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=2&currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #2</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>16.4 bits(8)</td> +<td> 47<span class="sumN ">()</span></td> +<td>8/8(100%)</td> +<td>0/8(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804227_2"> +<pre>Query 5 CGTCGTGA 12 + |||||||| +Sbjct 2591 CGTCGTGA 2598 + + +</pre> +</div> +<div id="hd_557804227_3"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 3: 839 to 845</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014&from=839&to=845" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 839 to 845 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=839:845&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 839 to 845 range">Graphics</a></span></span> +<span id="hsp557804227_3" class="alnParLinks"> +<a class="gbd toolsCtr navNext" title="Go to next match #4 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a class="gbd toolsCtr navPrev" title="Go to previous match #2 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=3&currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #3</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804227_3"> +<pre>Query 7 TCGTGAA 13 + ||||||| +Sbjct 839 TCGTGAA 845 + + +</pre> +</div> +<div id="hd_557804227_4"> +<div class="dflLnk hsp"><span class="alnRn"><label>Range 4: 2027 to 2033</label><span class="" id="rng_557804227"><a href="http://www.ncbi.nlm.nih.gov/nucleotide/557804227?report=genbank&log$=nuclalign&blast_rank=5&RID=PHWP1JNZ014&from=2027&to=2033" class="" target="lnkPHWP1JNZ014" title="Aligned region spanning positions 2027 to 2033 on 3J52_A">GenBank</a><a href="http://www.ncbi.nlm.nih.gov/nuccore/557804227?report=graph&rid=PHWP1JNZ014[557804227]&tracks=[key:sequence_track,name:Sequence,display_name:Sequence,id:STD1,category:Sequence,annots:Sequence,ShowLabel:true][key:gene_model_track,CDSProductFeats:false][key:alignment_track,name:other%20alignments,annots:NG%20Alignments%7CRefseq%20Alignments%7CGnomon%20Alignments%7CUnnamed,shown:false]&v=2027:2033&appname=ncbiblast&link_loc=fromHSP" class="spr" target="lnkPHWP1JNZ014" title="Show alignment to 3J52_A in Nucleotide Graphics for 2027 to 2033 range">Graphics</a></span></span> +<span id="hsp557804227_4" class="alnParLinks"> +<a class="gbd toolsCtr navNext" disabled="disabled" title="Go to next match #5 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804227" onclick="goToNextHSP(this,true)"><span>Next Match</span></a> +<a init="on" class="gbd toolsCtr navPrev" title="Go to previous match #3 for pdb|3J52|A" onmouseover="scan(this)" ref="ordinalpos=4&currseq=557804227" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a> +<a class="gbd toolsCtr navBack " href="#hsp557804227_1" title="Go to first match for pdb|3J52|A"><span>First Match</span></a> +</span> +</div> +<table class="alnParams"> +<caption class="hdnHeader">Alignment statistics for match #4</caption> +<tbody><tr> +<th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th><th class="aln_frame ">Frame</th> +</tr> +<tr> +<td>14.4 bits(7)</td> +<td> 186<span class="sumN ">()</span></td> +<td>7/7(100%)</td> +<td>0/7(0%)</td> +<td>Plus/Plus</td> +<td class="aln_frame "></td> +</tr></tbody></table> +<div class="dflLnk aln_feat hidden"><label>Features:</label><div></div></div> +</div> +<div id="ar_557804227_4"> +<pre>Query 9 GTGAAGA 15 + ||||||| +Sbjct 2027 GTGAAGA 2033 + + +</pre> +</div> +</div> <!-- alnAll_557804227 --> +</div> <!-- aln_557804227 --> +</form> + +</div></div> +<pre></pre> +</div><!--/#alignments--> +</div><!-- alignInfo --> +</div><!--ARIA--> + 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