Mercurial > repos > jankanis > package_python3_4
annotate tool_dependencies.xml @ 4:9491d3c0dbe6 draft
Add --with-ensurepip
| author | jankanis |
|---|---|
| date | Thu, 22 May 2014 11:01:04 -0400 |
| parents | d71cfcee2977 |
| children | fb4d95141633 |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="openssl" version="1.0.1g"> | |
|
2
ab42c5133d1c
Depend on latest openssl and set prior_install_required
jankanis
parents:
1
diff
changeset
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4 <repository changeset_revision="1c167e73d30f" name="package_openssl" owner="jankanis" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu" /> |
| 0 | 5 </package> |
| 6 | |
| 7 <package name="python3" version="3.4.1"> | |
| 8 <install version="1.0"> | |
| 9 <actions> | |
| 1 | 10 <action type="download_by_url">https://www.python.org/ftp/python/3.4.1/Python-3.4.1.tgz</action> |
| 0 | 11 <action type="set_environment_for_install"> |
|
2
ab42c5133d1c
Depend on latest openssl and set prior_install_required
jankanis
parents:
1
diff
changeset
|
12 <repository changeset_revision="1c167e73d30f" name="package_openssl" owner="jankanis" prior_installation_required="True" toolshed="http://toolshed.g2.bx.psu.edu"> |
| 0 | 13 <package name="openssl" version="1.0.1g" /> |
| 14 </repository> | |
| 15 </action> | |
| 4 | 16 <!-- |
| 17 Python3 config doesn't search for some optional dependencies | |
| 18 in non-standard locations. Patch config.py to also look at | |
| 19 the repositories we just installed above | |
| 20 --> | |
| 21 <action type="shell_command"> | |
| 22 patch << EOF | |
| 3 | 23 --- a/setup.py |
| 24 +++ b/setup.py | |
| 25 @@ -750,10 +750,14 @@ | |
| 26 exts.append( Extension('_socket', ['socketmodule.c'], | |
| 27 depends = ['socketmodule.h']) ) | |
| 28 # Detect SSL support for the socket module (via _ssl) | |
| 29 + CUSTOM_OPENSSL = os.environ.get('OPENSSL_ROOT_DIR') | |
| 30 search_for_ssl_incs_in = [ | |
| 31 '/usr/local/ssl/include', | |
| 32 '/usr/contrib/ssl/include/' | |
| 33 ] | |
| 34 + if CUSTOM_OPENSSL: | |
| 35 + search_for_ssl_incs_in.append(os.path.join(CUSTOM_OPENSSL, 'include')) | |
| 36 + | |
| 37 ssl_incs = find_file('openssl/ssl.h', inc_dirs, | |
| 38 search_for_ssl_incs_in | |
| 39 ) | |
| 40 @@ -762,10 +766,12 @@ | |
| 41 ['/usr/kerberos/include']) | |
| 42 if krb5_h: | |
| 43 ssl_incs += krb5_h | |
| 44 - ssl_libs = find_library_file(self.compiler, 'ssl',lib_dirs, | |
| 45 - ['/usr/local/ssl/lib', | |
| 46 - '/usr/contrib/ssl/lib/' | |
| 47 - ] ) | |
| 48 + | |
| 49 + search_for_ssl_libs_in = ['/usr/local/ssl/lib', | |
| 50 + '/usr/contrib/ssl/lib/'] | |
| 51 + if CUSTOM_OPENSSL: | |
| 52 + search_for_ssl_libs_in.append(os.path.join(CUSTOM_OPENSSL, 'lib')) | |
| 53 + ssl_libs = find_library_file(self.compiler, 'ssl', lib_dirs, search_for_ssl_libs_in) | |
| 54 | |
| 55 if (ssl_incs is not None and | |
| 56 ssl_libs is not None): | |
| 57 EOF | |
| 4 | 58 </action> |
| 59 <action type="autoconf">--prefix=$INSTALL_DIR --with-ensurepip</action> | |
| 1 | 60 <action type="set_environment"> |
| 61 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
| 62 <!-- empty PYTHONPATH, otherwise we will get Galaxy's Python 2 libraries in the Python 3 path--> | |
| 63 <environment_variable action="set_to" name="PYTHONPATH" /> | |
| 64 <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable> | |
| 4 | 65 <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable> |
| 1 | 66 </action> |
| 0 | 67 </actions> |
| 68 </install> | |
| 69 | |
| 70 <readme> | |
| 71 Python 3.4.1. Configured with the default settings, using --prefix=$INSTALL_DIR. | |
| 72 | |
| 73 Python as of version 3.3 includes a built-in virtual environment manager. To create a python 3 virtual env, include the following actions in your tool_dependencies.xml: | |
| 74 | |
| 75 <action type="set_environment_for_install"> | |
| 1 | 76 <repository name="python3" owner="jankanis"> |
| 0 | 77 <package name="python3" version="3.4.1" /> |
| 1 | 78 </repository> |
| 0 | 79 </action> |
| 80 <action type="shell_command"> | |
| 1 | 81 # Unset any saved environment settings from parent virtual |
| 82 # environments, e.g. for python 2 or if Galaxy itself is running | |
| 83 # from within a virtual environment. | |
| 84 unset _OLD_VIRTUAL_PATH; unset _OLD_VIRTUAL_PYTHONHOME | |
| 3 | 85 pyvenv {{\$MY_PACKAGE_NAME}} |
| 86 . {{\$MY_PACKAGE_NAME}}/bin/activate | |
| 87 pip3 install {{\$PYTHON-PACKAGE}} | |
| 0 | 88 </action> |
| 89 <action type="set_environment"> | |
| 3 | 90 <environment_variable name="PYTHONPATH" action="prepend_to">\$INSTALL_DIR/lib/python3.4/site-packages</environment_variable> |
| 0 | 91 </action> |
| 92 | |
| 93 </readme> | |
| 94 | |
| 95 </package> | |
| 96 </tool_dependency> |