|
0
|
1 \name{MatrixEQTL-package}
|
|
|
2 \alias{MatrixEQTL-package}
|
|
|
3 \alias{MatrixEQTL}
|
|
|
4 \docType{package}
|
|
|
5 \title{
|
|
|
6 Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
|
|
|
7 }
|
|
|
8 \description{
|
|
|
9 Matrix eQTL is designed for fast eQTL analysis of large datasets.
|
|
|
10 Matrix eQTL can test for association between genotype and gene expression using linear regression
|
|
|
11 with either additive or ANOVA (additive and dominant) genotype effects.
|
|
|
12 The models can include covariates to account for such factors as population stratification, gender, clinical variables, and surrogate variables.
|
|
|
13 Matrix eQTL also supports models with heteroscedastic and/or correlated errors,
|
|
|
14 false discovery rate estimation and separate treatment of local (cis) and distant (trans) eQTLs.
|
|
|
15 }
|
|
|
16 \details{
|
|
|
17 \tabular{ll}{
|
|
|
18 Package: \tab MatrixEQTL\cr
|
|
|
19 Type: \tab Package\cr
|
|
|
20 Version: \tab 2.1.1\cr
|
|
|
21 Date: \tab 2014-02-24\cr
|
|
|
22 License: \tab LGPL-3 \cr
|
|
|
23 LazyLoad: \tab yes\cr
|
|
|
24 Depends: \tab methods\cr
|
|
|
25 }
|
|
|
26 }
|
|
|
27 \author{
|
|
|
28 Andrey Shabalin \email{ashabalin@vcu.edu}
|
|
|
29
|
|
|
30 Maintainer: Andrey Shabalin <ashabalin@vcu.edu>
|
|
|
31 }
|
|
|
32 \references{
|
|
|
33 The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/}
|
|
|
34 }
|
|
|
35 \keyword{ package }
|
|
|
36 \keyword{ MatrixEQTL }
|
|
|
37 \keyword{ Matrix eQTL }
|
|
|
38 \seealso{
|
|
|
39 See \code{\link{Matrix_eQTL_engine}} for reference and sample code.
|
|
|
40 }
|
