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comparison MatrixEQTL/man/snpsloc.Rd @ 3:ae74f8fb3aef draft

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author jasonxu
date Fri, 12 Mar 2021 08:20:57 +0000
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1 \name{snpsloc}
2 \alias{snpsloc}
3 \docType{data}
4 \title{
5 Artificial data for Matrix eQTL sample code: SNP location file.
6 }
7 \description{
8 Artificial SNP location file for 15 markers.
9 \tabular{llll}{
10 snpid \tab chr \tab pos \cr
11 Snp_01 \tab chr1 \tab 721289 \cr
12 Snp_02 \tab chr1 \tab 752565 \cr
13 \ldots \tab \ldots \tab \ldots \cr
14 }
15 }
16 \format{
17 A data frame with 3 columns.
18 \describe{
19 \item{\code{snpid}}{A column with SNP names. The order does not have to match the genotype data set.}
20 \item{\code{chr}}{Chromosome number, i.e. chr1.}
21 \item{\code{pos}}{Coordinate of the SNP.}
22 }
23 }
24 \references{
25 The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/}
26 }
27 \seealso{
28 See \code{\link{Matrix_eQTL_engine}} for reference and sample code.
29 }
30 \keyword{datasets}