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comparison MatrixEQTL/man/geneloc.Rd @ 0:cd4c8e4a4b5b draft

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author jasonxu
date Fri, 12 Mar 2021 08:12:46 +0000
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1 \name{geneloc}
2 \alias{geneloc}
3 \docType{data}
4 \title{
5 Artificial data for Matrix eQTL sample code: Gene location file.
6 }
7 \description{
8 Artificial Gene location file for 10 genes.
9 \tabular{llll}{
10 geneid \tab chr \tab left \tab right \cr
11 Gene_01 \tab chr1 \tab 721289 \tab 731289 \cr
12 Gene_02 \tab chr1 \tab 752565 \tab 762565 \cr
13 \ldots \tab \ldots \tab \ldots \tab \ldots \cr
14 }
15 }
16 \format{
17 A data frame with 4 columns.
18 \describe{
19 \item{\code{geneid}}{A column with gene names. The order does not have to match the gene expression data set.}
20 \item{\code{chr}}{Chromosome number, i.e. chr1.}
21 \item{\code{left}}{Lower (smaller) coordinate of the gene begining/end.}
22 \item{\code{right}}{Upper (larger) coordinate of the gene begining/end.}
23 }
24 }
25 \references{
26 The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/}
27 }
28 \seealso{
29 See \code{\link{Matrix_eQTL_engine}} for reference and sample code.
30 }
31 \keyword{datasets}