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view MatrixEQTL/man/geneloc.Rd @ 4:cf4e9238644c draft default tip
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author | jasonxu |
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date | Fri, 12 Mar 2021 08:23:32 +0000 |
parents | cd4c8e4a4b5b |
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\name{geneloc} \alias{geneloc} \docType{data} \title{ Artificial data for Matrix eQTL sample code: Gene location file. } \description{ Artificial Gene location file for 10 genes. \tabular{llll}{ geneid \tab chr \tab left \tab right \cr Gene_01 \tab chr1 \tab 721289 \tab 731289 \cr Gene_02 \tab chr1 \tab 752565 \tab 762565 \cr \ldots \tab \ldots \tab \ldots \tab \ldots \cr } } \format{ A data frame with 4 columns. \describe{ \item{\code{geneid}}{A column with gene names. The order does not have to match the gene expression data set.} \item{\code{chr}}{Chromosome number, i.e. chr1.} \item{\code{left}}{Lower (smaller) coordinate of the gene begining/end.} \item{\code{right}}{Upper (larger) coordinate of the gene begining/end.} } } \references{ The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/} } \seealso{ See \code{\link{Matrix_eQTL_engine}} for reference and sample code. } \keyword{datasets}