Mercurial > repos > jasonxu > matrixeqtl
comparison MatrixEQTL/man/snpsloc.Rd @ 0:cd4c8e4a4b5b draft
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author | jasonxu |
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date | Fri, 12 Mar 2021 08:12:46 +0000 |
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-1:000000000000 | 0:cd4c8e4a4b5b |
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1 \name{snpsloc} | |
2 \alias{snpsloc} | |
3 \docType{data} | |
4 \title{ | |
5 Artificial data for Matrix eQTL sample code: SNP location file. | |
6 } | |
7 \description{ | |
8 Artificial SNP location file for 15 markers. | |
9 \tabular{llll}{ | |
10 snpid \tab chr \tab pos \cr | |
11 Snp_01 \tab chr1 \tab 721289 \cr | |
12 Snp_02 \tab chr1 \tab 752565 \cr | |
13 \ldots \tab \ldots \tab \ldots \cr | |
14 } | |
15 } | |
16 \format{ | |
17 A data frame with 3 columns. | |
18 \describe{ | |
19 \item{\code{snpid}}{A column with SNP names. The order does not have to match the genotype data set.} | |
20 \item{\code{chr}}{Chromosome number, i.e. chr1.} | |
21 \item{\code{pos}}{Coordinate of the SNP.} | |
22 } | |
23 } | |
24 \references{ | |
25 The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/} | |
26 } | |
27 \seealso{ | |
28 See \code{\link{Matrix_eQTL_engine}} for reference and sample code. | |
29 } | |
30 \keyword{datasets} |