diff MatrixEQTL/man/geneloc.Rd @ 3:ae74f8fb3aef draft

Uploaded
author jasonxu
date Fri, 12 Mar 2021 08:20:57 +0000
parents cd4c8e4a4b5b
children
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+++ b/MatrixEQTL/man/geneloc.Rd	Fri Mar 12 08:20:57 2021 +0000
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+\name{geneloc}
+\alias{geneloc}
+\docType{data}
+\title{
+	Artificial data for Matrix eQTL sample code: Gene location file.
+}
+\description{
+	Artificial Gene location file for 10 genes. 
+	\tabular{llll}{
+		geneid  \tab chr   		\tab left 	\tab right \cr
+		Gene_01 \tab chr1     \tab 721289 \tab 731289 \cr
+		Gene_02 \tab chr1     \tab 752565 \tab 762565 \cr
+		\ldots  \tab \ldots   \tab \ldots \tab \ldots \cr
+	}
+}
+\format{
+  A data frame with 4 columns.
+  \describe{
+    \item{\code{geneid}}{A column with gene names. The order does not have to match the gene expression data set.}
+    \item{\code{chr}}{Chromosome number, i.e. chr1.}
+    \item{\code{left}}{Lower (smaller) coordinate of the gene begining/end.}
+    \item{\code{right}}{Upper (larger) coordinate of the gene begining/end.}
+  }
+}
+\references{
+	The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/}
+}
+\seealso{
+	See \code{\link{Matrix_eQTL_engine}} for reference and sample code.
+}
+\keyword{datasets}