Mercurial > repos > jasonxu > matrixeqtl
diff MatrixEQTL/man/geneloc.Rd @ 3:ae74f8fb3aef draft
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author | jasonxu |
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date | Fri, 12 Mar 2021 08:20:57 +0000 |
parents | cd4c8e4a4b5b |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/MatrixEQTL/man/geneloc.Rd Fri Mar 12 08:20:57 2021 +0000 @@ -0,0 +1,31 @@ +\name{geneloc} +\alias{geneloc} +\docType{data} +\title{ + Artificial data for Matrix eQTL sample code: Gene location file. +} +\description{ + Artificial Gene location file for 10 genes. + \tabular{llll}{ + geneid \tab chr \tab left \tab right \cr + Gene_01 \tab chr1 \tab 721289 \tab 731289 \cr + Gene_02 \tab chr1 \tab 752565 \tab 762565 \cr + \ldots \tab \ldots \tab \ldots \tab \ldots \cr + } +} +\format{ + A data frame with 4 columns. + \describe{ + \item{\code{geneid}}{A column with gene names. The order does not have to match the gene expression data set.} + \item{\code{chr}}{Chromosome number, i.e. chr1.} + \item{\code{left}}{Lower (smaller) coordinate of the gene begining/end.} + \item{\code{right}}{Upper (larger) coordinate of the gene begining/end.} + } +} +\references{ + The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/} +} +\seealso{ + See \code{\link{Matrix_eQTL_engine}} for reference and sample code. +} +\keyword{datasets}