Mercurial > repos > jay > gaiac_sensor_performance_evaluation
view gaiac_heatmap/gaiac_heatmap.py @ 3:957d0bc600d3 draft default tip
planemo upload for repository https://github.com/jaidevjoshi83/gaiac commit e9587f93346c7b55e1be00bad5844bf2db3ed03d-dirty
author | jay |
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date | Thu, 10 Jul 2025 19:41:22 +0000 |
parents | 7c9552ed8676 |
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import numpy as np import pandas as pd import matplotlib.pyplot as plt import seaborn as sns import argparse #%matplotlib inline def HeatMap(infile, clm_list, custom_column_labels, outfile, plottitile, fig_height, fig_width): df=pd.read_csv(infile, sep="\t") cl = df.columns.tolist() clms = [ cl[int(x)-1] for x in clm_list.split(',')] if custom_column_labels != None: labels = custom_column_labels.split(',') else: labels = clms sns.set(font_scale=0.6,style='whitegrid') plt.figure(figsize=(int(fig_height), int(fig_width))) ax = sns.heatmap(df[clms].corr(),annot=True,xticklabels=labels,yticklabels=labels,fmt='.2g') bottom, top = ax.get_ylim() ax.set_ylim(bottom + 0.5, top - 0.5) plt.savefig(outfile,dpi=300,bbox_inches="tight") if __name__=="__main__": parser = argparse.ArgumentParser() parser.add_argument("-I", "--infile", required=True, default=None, help=".tsv") parser.add_argument("-C", "--column_list", required=False, default=False, help="Path to target tsv file") parser.add_argument("-L", "--custom_column_name", required=False, default=None, help="Path to target tsv file") parser.add_argument("-O", "--output", required=False, default='Out.png', help="Path to target tsv file") parser.add_argument("-T", "--title", required=False, default='Correlation plot', help="Path to target tsv file") parser.add_argument("-H", "--height", required=False, default='14', help="Path to target tsv file") parser.add_argument("-W", "--width", required=False, default='12', help="Path to target tsv file") args = parser.parse_args() HeatMap(args.infile, args.column_list, args.custom_column_name, args.output, args.title, args.width, args.height)